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BUILD BIN report for scfind on tokay2

This page was generated on 2018-10-17 08:44:37 -0400 (Wed, 17 Oct 2018).

Package 1324/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scfind 1.2.0
Vladimir Kiselev
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/scfind
Branch: RELEASE_3_7
Last Commit: 04a8d6b
Last Changed Date: 2018-04-30 10:35:48 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: scfind
Version: 1.2.0
Command: rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.2.0.tar.gz
StartedAt: 2018-10-17 06:57:33 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:58:14 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 41.5 seconds
RetCode: 0
Status:  OK  
PackageFile: scfind_1.2.0.zip
PackageFileSize: 3.385 MiB

Command output

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###
### Running command:
###
###   rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.2.0.tar.gz
###
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install for i386

* installing *source* package 'scfind' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp: In function 'std::vector<bool> int2bin(int)':
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
     int rem;
         ^
eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)':
eliasFano.cpp:83:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (int k = 0; k < h.size(); k++) {
                               ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/scfind.buildbin-libdir/scfind/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scfind'
    finding HTML links ... done
    ann                                     html  
    buildCellIndex                          html  
    buildCellTypeIndex                      html  
    findCell                                html  
    findCellType                            html  
    yan                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'scfind' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp: In function 'std::vector<bool> int2bin(int)':
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
     int rem;
         ^
eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)':
eliasFano.cpp:83:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (int k = 0; k < h.size(); k++) {
                               ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/scfind.buildbin-libdir/scfind/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scfind' as scfind_1.2.0.zip
* DONE (scfind)
In R CMD INSTALL
In R CMD INSTALL