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INSTALL report for plw on tokay2

This page was generated on 2018-10-17 08:33:38 -0400 (Wed, 17 Oct 2018).

Package 1107/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plw 1.40.0
Magnus Astrand
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/plw
Branch: RELEASE_3_7
Last Commit: 7a59826
Last Changed Date: 2018-04-30 10:35:08 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: plw
Version: 1.40.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/plw_1.40.0.tar.gz && rm -rf plw.buildbin-libdir && mkdir plw.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plw.buildbin-libdir plw_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL plw_1.40.0.zip && rm plw_1.40.0.tar.gz plw_1.40.0.zip
StartedAt: 2018-10-16 19:25:37 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:26:21 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 44.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/plw_1.40.0.tar.gz && rm -rf plw.buildbin-libdir && mkdir plw.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plw.buildbin-libdir plw_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL plw_1.40.0.zip && rm plw_1.40.0.tar.gz plw_1.40.0.zip
###
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100  390k  100  390k    0     0  6647k      0 --:--:-- --:--:-- --:--:-- 7514k

install for i386

* installing *source* package 'plw' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorProbsAndSigmaHatStrata0':
SpecialFunctions.c:154:20: warning: variable 's2' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                    ^
SpecialFunctions.c:154:17: warning: variable 's1' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                 ^
SpecialFunctions.c:154:14: warning: variable 's0' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
              ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c SpecialOptim.c -o SpecialOptim.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o plw.dll tmp.def SpecialFunctions.o SpecialOptim.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/plw.buildbin-libdir/plw/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'plw'
    finding HTML links ... done
    AffySpikeU95Subset                      html  
    HowToPLW                                html  
    estimateMVbeta                          html  
    estimateSigma                           html  
    estimateSigmaMV                         html  
    estimateSigmaMVbeta                     html  
    getKnots                                html  
    lmw                                     html  
    logitT                                  html  
    plw-package                             html  
    plw                                     html  
    scaleParameterPlot                      html  
    statByIndex                             html  
    topRankSummary                          html  
    varHistPlot                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'plw' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorProbsAndSigmaHatStrata0':
SpecialFunctions.c:154:20: warning: variable 's2' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                    ^
SpecialFunctions.c:154:17: warning: variable 's1' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
                 ^
SpecialFunctions.c:154:14: warning: variable 's0' set but not used [-Wunused-but-set-variable]
  double kk,C,s0,s1,s2,temp0,aa;
              ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c SpecialOptim.c -o SpecialOptim.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o plw.dll tmp.def SpecialFunctions.o SpecialOptim.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/plw.buildbin-libdir/plw/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plw' as plw_1.40.0.zip
* DONE (plw)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'plw' successfully unpacked and MD5 sums checked
In R CMD INSTALL