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INSTALL report for pdInfoBuilder on tokay2

This page was generated on 2018-10-17 08:33:05 -0400 (Wed, 17 Oct 2018).

Package 1076/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pdInfoBuilder 1.44.0
Benilton Carvalho
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/pdInfoBuilder
Branch: RELEASE_3_7
Last Commit: d7cd64e
Last Changed Date: 2018-04-30 10:35:06 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pdInfoBuilder
Version: 1.44.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/pdInfoBuilder_1.44.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.44.0.zip && rm pdInfoBuilder_1.44.0.tar.gz pdInfoBuilder_1.44.0.zip
StartedAt: 2018-10-16 19:49:32 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:50:59 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 86.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/pdInfoBuilder_1.44.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.44.0.zip && rm pdInfoBuilder_1.44.0.tar.gz pdInfoBuilder_1.44.0.zip
###
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install for i386

* installing *source* package 'pdInfoBuilder' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c pdInfoBuilder.c -o pdInfoBuilder.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** help
*** installing help indices
  converting help for package 'pdInfoBuilder'
    finding HTML links ... done
    AffyClariomSPDInfoPkgSeed-class         html  
    AffyExpressionPDInfoPkgSeed-class       html  
    AffySNPCNVPDInfoPkgSeed-class           html  
    AffySNPCNVPDInfoPkgSeed2-class          html  
    AffySNPPDInfoPkgSeed-class              html  
    AffySNPPDInfoPkgSeed2-class             html  
    AffySTPDInfoPkgSeed-class               html  
    AffyTilingPDInfoPkgSeed-class           html  
    GenericArrayFunctions                   html  
    NgsExpressionPDInfoPkgSeed-class        html  
    NgsTilingPDInfoPkgSeed-class            html  
    NimbleGenPDInfoPkgSeed-class            html  
    chipName                                html  
    getGeometry                             html  
    makePdInfoPackage                       html  
** building package indices
** installing vignettes
   'BuildingPDInfoPkgs.Rnw' 
   'howto-AffymetrixMapping.Rnw' 
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
In R CMD INSTALL

install for x64

* installing *source* package 'pdInfoBuilder' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c pdInfoBuilder.c -o pdInfoBuilder.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x64
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
* MD5 sums
packaged installation of 'pdInfoBuilder' as pdInfoBuilder_1.44.0.zip
* DONE (pdInfoBuilder)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'pdInfoBuilder' successfully unpacked and MD5 sums checked
In R CMD INSTALL