Back to Multiple platform build/check report for BioC 3.7
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for pRoloc on tokay2

This page was generated on 2018-10-17 08:36:45 -0400 (Wed, 17 Oct 2018).

Package 1133/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRoloc 1.20.2
Laurent Gatto
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/pRoloc
Branch: RELEASE_3_7
Last Commit: dfbe646
Last Changed Date: 2018-09-24 16:00:13 -0400 (Mon, 24 Sep 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pRoloc
Version: 1.20.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/pRoloc_1.20.2.tar.gz && rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pRoloc.buildbin-libdir pRoloc_1.20.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.20.2.zip && rm pRoloc_1.20.2.tar.gz pRoloc_1.20.2.zip
StartedAt: 2018-10-16 20:39:36 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:41:48 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 132.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/pRoloc_1.20.2.tar.gz && rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pRoloc.buildbin-libdir pRoloc_1.20.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.20.2.zip && rm pRoloc_1.20.2.tar.gz pRoloc_1.20.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2181k  100 2181k    0     0  28.3M      0 --:--:-- --:--:-- --:--:-- 31.3M

install for i386

* installing *source* package 'pRoloc' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pRoloc.cpp -o pRoloc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o pRoloc.dll tmp.def pRoloc.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocGenerics::var' by 'stats::var' when loading 'MLInterfaces'
** help
*** installing help indices
  converting help for package 'pRoloc'
    finding HTML links ... done
    AnnotationParams-class                  html  
    ClustDist-class                         html  
    ClustDistList-class                     html  
    GenRegRes-class                         html  
    finding level-2 HTML links ... done

    MLearn-methods                          html  
    MartInstance-class                      html  
    QSep-class                              html  
    SpatProtVis-class                       html  
    addGoAnnotations                        html  
    addLegend                               html  
    addMarkers                              html  
    checkFeatureNamesOverlap                html  
    checkFvarOverlap                        html  
    chi2-methods                            html  
    classWeights                            html  
    clustDist                               html  
    defunct                                 html  
    empPvalues                              html  
    exprsToRatios-methods                   html  
    fDataToUnknown                          html  
    filterBinMSnSet                         html  
    filterMaxMarkers                        html  
    filterMinMarkers                        html  
    filterZeroCols                          html  
    getGOFromFeatures                       html  
    getMarkerClasses                        html  
    getMarkers                              html  
    getNormDist                             html  
    getPredictions                          html  
    getStockcol                             html  
    goIdToTerm                              html  
    highlightOnPlot                         html  
    knnClassification                       html  
    knnOptimisation                         html  
    knntlClassification                     html  
    knntlOptimisation                       html  
    ksvmClassification                      html  
    ksvmOptimisation                        html  
    lopims                                  html  
    makeGoSet                               html  
    markerMSnSet                            html  
    markers                                 html  
    minMarkers                              html  
    move2Ds                                 html  
    mrkConsProfiles                         html  
    mrkHClust                               html  
    nbClassification                        html  
    nbOptimisation                          html  
    nndist-methods                          html  
    nnetClassification                      html  
    nnetOptimisation                        html  
    orderGoAnnotations                      html  
    orgQuants                               html  
    pRolocmarkers                           html  
    perTurboClassification                  html  
    perTurboOptimisation                    html  
    phenoDisco                              html  
    plot2D                                  html  
    plot2Ds                                 html  
    plotDist                                html  
    plsdaClassification                     html  
    plsdaOptimisation                       html  
    rfClassification                        html  
    rfOptimisation                          html  
    sampleMSnSet                            html  
    showGOEvidenceCodes                     html  
    subsetMarkers                           html  
    svmClassification                       html  
    svmOptimisation                         html  
    testMSnSet                              html  
    testMarkers                             html  
    thetas                                  html  
    undocumented                            html  
    zerosInBinMSnSet                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::var' by 'stats::var' when loading 'MLInterfaces'
In R CMD INSTALL

install for x64

* installing *source* package 'pRoloc' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c pRoloc.cpp -o pRoloc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o pRoloc.dll tmp.def pRoloc.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::var' by 'stats::var' when loading 'MLInterfaces'
* MD5 sums
packaged installation of 'pRoloc' as pRoloc_1.20.2.zip
* DONE (pRoloc)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'pRoloc' successfully unpacked and MD5 sums checked
In R CMD INSTALL