Pau Bellot
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/netbenchmark |
| Branch: RELEASE_3_7 |
| Last Commit: 40e09d4 |
| Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:08 -0400 (Wed, 17 Oct 2018).
| Package 985/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| netbenchmark 1.12.0 Pau Bellot
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: netbenchmark |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/netbenchmark_1.12.0.tar.gz && rm -rf netbenchmark.buildbin-libdir && mkdir netbenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netbenchmark.buildbin-libdir netbenchmark_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL netbenchmark_1.12.0.zip && rm netbenchmark_1.12.0.tar.gz netbenchmark_1.12.0.zip |
| StartedAt: 2018-10-16 19:11:53 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:13:13 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 79.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/netbenchmark_1.12.0.tar.gz && rm -rf netbenchmark.buildbin-libdir && mkdir netbenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netbenchmark.buildbin-libdir netbenchmark_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL netbenchmark_1.12.0.zip && rm netbenchmark_1.12.0.tar.gz netbenchmark_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 33889 100 33889 0 0 591k 0 --:--:-- --:--:-- --:--:-- 675k
install for i386
* installing *source* package 'netbenchmark' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c netbenchmark_init.c -o netbenchmark_init.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rate.cpp -o rate.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c zsc.cpp -o zsc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o netbenchmark.dll tmp.def RcppExports.o netbenchmark_init.o rate.o zsc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/netbenchmark.buildbin-libdir/netbenchmark/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'netbenchmark'
finding HTML links ... done
GeneNet.wrap html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/GeneNet.wrap.Rd:48: file link 'GeneNet-package' in package 'GeneNet' does not exist and so has been treated as a topic
Genie3.wrap html
RegistrerWrapper html
aracne.wrap html
c3net.wrap html
clr.wrap html
comp.metr html
datasource.subsample html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/datasource.subsample.Rd:35: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
evaluate html
experiments.bench html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/experiments.bench.Rd:48: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/experiments.bench.Rd:77: file link 'rnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/experiments.bench.Rd:78: file link 'rlnorm' in package 'stats' does not exist and so has been treated as a topic
mrnet.wrap html
mrnetb.wrap html
mutrank.wrap html
netbenchmark-package html
netbenchmark html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/netbenchmark.Rd:40: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
netbenchmark.data html
noise.bench html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiIscGH/R.INSTALL165c6a4d2a78/netbenchmark/man/noise.bench.Rd:46: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
ntb_globals html
pcit.wrap html
rate html
zsc html
zscore.wrap html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'netbenchmark' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c netbenchmark_init.c -o netbenchmark_init.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rate.cpp -o rate.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c zsc.cpp -o zsc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o netbenchmark.dll tmp.def RcppExports.o netbenchmark_init.o rate.o zsc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/netbenchmark.buildbin-libdir/netbenchmark/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'netbenchmark' as netbenchmark_1.12.0.zip
* DONE (netbenchmark)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'netbenchmark' successfully unpacked and MD5 sums checked
In R CMD INSTALL