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INSTALL report for myvariant on tokay2

This page was generated on 2018-10-17 08:40:59 -0400 (Wed, 17 Oct 2018).

Package 974/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
myvariant 1.10.0
Adam Mark, Chunlei Wu
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/myvariant
Branch: RELEASE_3_7
Last Commit: 0ff48d7
Last Changed Date: 2018-04-30 10:35:37 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: myvariant
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/myvariant_1.10.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL myvariant_1.10.0.zip && rm myvariant_1.10.0.tar.gz myvariant_1.10.0.zip
StartedAt: 2018-10-16 20:24:31 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:25:17 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 46.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/myvariant_1.10.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL myvariant_1.10.0.zip && rm myvariant_1.10.0.tar.gz myvariant_1.10.0.zip
###
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100 17613  100 17613    0     0   341k      0 --:--:-- --:--:-- --:--:--  390k

install for i386

* installing *source* package 'myvariant' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'myvariant'
    finding HTML links ... done
    MyVariant-class                         html  
    MyVariant                               html  
    formatHgvs                              html  
    finding level-2 HTML links ... done

    formatSingleHgvs                        html  
    getVariant                              html  
    getVariants                             html  
    metadata                                html  
    myvariant-package                       html  
    queryVariant                            html  
    queryVariants                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'myvariant' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'myvariant' as myvariant_1.10.0.zip
* DONE (myvariant)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'myvariant' successfully unpacked and MD5 sums checked
In R CMD INSTALL