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INSTALL report for metagenomeFeatures on tokay2

This page was generated on 2018-10-17 08:41:11 -0400 (Wed, 17 Oct 2018).

Package 872/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metagenomeFeatures 2.0.0
Nathan D. Olson
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/metagenomeFeatures
Branch: RELEASE_3_7
Last Commit: c295899
Last Changed Date: 2018-04-30 10:35:38 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: metagenomeFeatures
Version: 2.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/metagenomeFeatures_2.0.0.tar.gz && rm -rf metagenomeFeatures.buildbin-libdir && mkdir metagenomeFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metagenomeFeatures.buildbin-libdir metagenomeFeatures_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL metagenomeFeatures_2.0.0.zip && rm metagenomeFeatures_2.0.0.tar.gz metagenomeFeatures_2.0.0.zip
StartedAt: 2018-10-16 19:27:38 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:28:18 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 40.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/metagenomeFeatures_2.0.0.tar.gz && rm -rf metagenomeFeatures.buildbin-libdir && mkdir metagenomeFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metagenomeFeatures.buildbin-libdir metagenomeFeatures_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL metagenomeFeatures_2.0.0.zip && rm metagenomeFeatures_2.0.0.tar.gz metagenomeFeatures_2.0.0.zip
###
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install for i386

* installing *source* package 'metagenomeFeatures' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'lazyeval::is_formula' by 'purrr::is_formula' when loading 'metagenomeFeatures'
Warning: replacing previous import 'lazyeval::is_atomic' by 'purrr::is_atomic' when loading 'metagenomeFeatures'
Warning: subclass "QualityScaledDNAStringSet" of class "DNAStringSet" is not local and cannot be updated for new inheritance information; consider setClassUnion()
** help
*** installing help indices
  converting help for package 'metagenomeFeatures'
    finding HTML links ... done
    MgDb-class                              html  
    annotateFeatures-MgDb-method            html  
    get_gg13.8_85MgDb                       html  
    make_mgdb_sqlite                        html  
    mgDb_                                   html  
    mgF_                                    html  
    mgFeatures-class                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0mLViE/R.INSTALL1538dcf2909/metagenomeFeatures/man/mgFeatures-class.Rd:12: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    mgFeatures                              html  
    mock_mgF                                html  
    mock_query_df                           html  
    newMgDb                                 html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp0mLViE/R.INSTALL1538dcf2909/metagenomeFeatures/man/reexports.Rd:14: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
    select-MgDb-method                      html  
    show-MgDb-method                        html  
    taxa_                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'lazyeval::is_formula' by 'purrr::is_formula' when loading 'metagenomeFeatures'
Warning: replacing previous import 'lazyeval::is_atomic' by 'purrr::is_atomic' when loading 'metagenomeFeatures'
In R CMD INSTALL

install for x64

* installing *source* package 'metagenomeFeatures' ...
** testing if installed package can be loaded
Warning: replacing previous import 'lazyeval::is_formula' by 'purrr::is_formula' when loading 'metagenomeFeatures'
Warning: replacing previous import 'lazyeval::is_atomic' by 'purrr::is_atomic' when loading 'metagenomeFeatures'
* MD5 sums
packaged installation of 'metagenomeFeatures' as metagenomeFeatures_2.0.0.zip
* DONE (metagenomeFeatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'metagenomeFeatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL