Back to Multiple platform build/check report for BioC 3.7
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

INSTALL report for martini on tokay2

This page was generated on 2018-10-17 08:45:21 -0400 (Wed, 17 Oct 2018).

Package 830/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
martini 1.0.0
Hector Climente-Gonzalez
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/martini
Branch: RELEASE_3_7
Last Commit: 5f5a74c
Last Changed Date: 2018-04-30 10:35:49 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: martini
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/martini_1.0.0.tar.gz && rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL martini_1.0.0.zip && rm martini_1.0.0.tar.gz martini_1.0.0.zip
StartedAt: 2018-10-16 19:48:27 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:49:45 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 78.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/martini_1.0.0.tar.gz && rm -rf martini.buildbin-libdir && mkdir martini.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=martini.buildbin-libdir martini_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL martini_1.0.0.zip && rm martini_1.0.0.tar.gz martini_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2497k  100 2497k    0     0  23.6M      0 --:--:-- --:--:-- --:--:-- 25.1M

install for i386

* installing *source* package 'martini' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c evo.cpp -o evo.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c run_scones.cpp -o run_scones.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o evo.o run_scones.o C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/usrlib/i386/libgin.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/usrlib/i386/libmaxflow.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/usrlib/i386/libcephes.a -lz -pthread -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/martini.buildbin-libdir/martini/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'martini'
    finding HTML links ... done
    calculateE                              html  
    calculateG                              html  
    check_installed                         html  
    encode_gwas                             html  
    evo                                     html  
    get_GI_network                          html  
    get_GM_network                          html  
    get_GS_network                          html  
    get_evo_settings                        html  
    get_ppi                                 html  
    get_snp_modules                         html  
    is_coherent                             html  
    ldweight_edges                          html  
    minigwas                                html  
    minippi                                 html  
    minisnpMapping                          html  
    run_scones                              html  
    search_cones                            html  
    simulate_causal_snps                    html  
    simulate_phenotype                      html  
    snp2gene                                html  
    subnet                                  html  
    subvert                                 html  
    test_cones_modules                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'martini' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c evo.cpp -o evo.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c run_scones.cpp -o run_scones.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o martini.dll tmp.def RcppExports.o evo.o run_scones.o C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/usrlib/x64/libgin.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/usrlib/x64/libmaxflow.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rgin/usrlib/x64/libcephes.a -lz -pthread -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/martini.buildbin-libdir/martini/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'martini' as martini_1.0.0.zip
* DONE (martini)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'martini' successfully unpacked and MD5 sums checked
In R CMD INSTALL