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INSTALL report for maftools on tokay2

This page was generated on 2018-10-17 08:42:35 -0400 (Wed, 17 Oct 2018).

Package 818/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maftools 1.6.15
Anand Mayakonda
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/maftools
Branch: RELEASE_3_7
Last Commit: aa93579
Last Changed Date: 2018-07-22 07:06:08 -0400 (Sun, 22 Jul 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: maftools
Version: 1.6.15
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/maftools_1.6.15.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_1.6.15.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL maftools_1.6.15.zip && rm maftools_1.6.15.tar.gz maftools_1.6.15.zip
StartedAt: 2018-10-16 20:19:17 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:21:02 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 105.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/maftools_1.6.15.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_1.6.15.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL maftools_1.6.15.zip && rm maftools_1.6.15.tar.gz maftools_1.6.15.zip
###
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install for i386

* installing *source* package 'maftools' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'maftools'
    finding HTML links ... done
    GISTIC-class                            html  
    MAF-class                               html  
    annovarToMaf                            html  
    clinicalEnrichment                      html  
    coOncoplot                              html  
    extractSignatures                       html  
    finding level-2 HTML links ... done

    forestPlot                              html  
    geneCloud                               html  
    genesToBarcodes                         html  
    genotypeMatrix                          html  
    getClinicalData                         html  
    getCytobandSummary                      html  
    getFields                               html  
    getGeneSummary                          html  
    getSampleSummary                        html  
    gisticBubblePlot                        html  
    gisticChromPlot                         html  
    gisticOncoPlot                          html  
    icgcSimpleMutationToMAF                 html  
    inferHeterogeneity                      html  
    lollipopPlot                            html  
    lollipopPlot2                           html  
    mafCompare                              html  
    mafSummary                              html  
    mafSurvival                             html  
    math.score                              html  
    mutCountMatrix                          html  
    oncodrive                               html  
    oncoplot                                html  
    oncostrip                               html  
    oncotate                                html  
    pancanComparison                        html  
    pfamDomains                             html  
    plotApobecDiff                          html  
    plotCBSsegments                         html  
    plotClusters                            html  
    plotEnrichmentResults                   html  
    plotOncodrive                           html  
    plotSignatures                          html  
    plotTiTv                                html  
    plotVaf                                 html  
    plotmafSummary                          html  
    prepareMutSig                           html  
    rainfallPlot                            html  
    read.maf                                html  
    readGistic                              html  
    signatureEnrichment                     html  
    somaticInteractions                     html  
    subsetMaf                               html  
    tcgaCompare                             html  
    titv                                    html  
    trinucleotideMatrix                     html  
    write.GisticSummary                     html  
    write.mafSummary                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'maftools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maftools' as maftools_1.6.15.zip
* DONE (maftools)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'maftools' successfully unpacked and MD5 sums checked
In R CMD INSTALL