Peter M. Haverty
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/genoset |
| Branch: RELEASE_3_7 |
| Last Commit: 0ff7c06 |
| Last Changed Date: 2018-04-30 10:35:17 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:35:19 -0400 (Wed, 17 Oct 2018).
| Package 601/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| genoset 1.36.0 Peter M. Haverty
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: genoset |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/genoset_1.36.0.tar.gz && rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genoset.buildbin-libdir genoset_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL genoset_1.36.0.zip && rm genoset_1.36.0.tar.gz genoset_1.36.0.zip |
| StartedAt: 2018-10-16 19:33:04 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:34:26 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 82.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/genoset_1.36.0.tar.gz && rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genoset.buildbin-libdir genoset_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL genoset_1.36.0.zip && rm genoset_1.36.0.tar.gz genoset_1.36.0.zip
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install for i386
* installing *source* package 'genoset' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c bounds.c -o bounds.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c rangeSummaries.c -o rangeSummaries.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/genoset.buildbin-libdir/genoset/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: subclass "GenomicPos" of class "GenomicRanges" is not local and cannot be updated for new inheritance information; consider setClassUnion()
** help
*** installing help indices
converting help for package 'genoset'
finding HTML links ... done
GenoSet-class html
finding level-2 HTML links ... done
RleDataFrame-class html
RleDataFrame-views html
baf2mbaf html
boundingIndices html
boundingIndicesByChr html
bounds2Rle html
calcGC html
calcGC2 html
chr-methods html
chrIndices-methods html
chrInfo-methods html
chrNames-methods html
chrOrder html
chrPartitioning html
cn2lr-methods html
do_rledf_range_summary html
do_rledf_views html
fixSegNAs html
gcCorrect html
genoPlot-methods html
genoPos-methods html
genome html
genomeAxis html
genomicranges-methods html
genoset-dataset html
genoset-methods html
genoset-package html
genoset-subset html
isGenomeOrder html
lr2cn html
modeCenter html
numCallable html
pos-methods html
rangeSampleMeans html
rangeSegMeanLength-methods html
rbindDataframe html
readGenoSet html
runCBS html
segPairTable-methods html
segTable-methods html
segs2Granges html
segs2Rle html
segs2RleDataFrame html
toGenomeOrder html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'genoset' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c bounds.c -o bounds.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c rangeSummaries.c -o rangeSummaries.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/genoset.buildbin-libdir/genoset/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genoset' as genoset_1.36.0.zip
* DONE (genoset)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'genoset' successfully unpacked and MD5 sums checked
In R CMD INSTALL