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INSTALL report for geneRxCluster on tokay2

This page was generated on 2018-10-17 08:38:03 -0400 (Wed, 17 Oct 2018).

Package 575/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneRxCluster 1.16.0
Charles Berry
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/geneRxCluster
Branch: RELEASE_3_7
Last Commit: 69c5cb2
Last Changed Date: 2018-04-30 10:35:32 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: geneRxCluster
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/geneRxCluster_1.16.0.tar.gz && rm -rf geneRxCluster.buildbin-libdir && mkdir geneRxCluster.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geneRxCluster.buildbin-libdir geneRxCluster_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL geneRxCluster_1.16.0.zip && rm geneRxCluster_1.16.0.tar.gz geneRxCluster_1.16.0.zip
StartedAt: 2018-10-16 19:29:25 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:30:11 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 45.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/geneRxCluster_1.16.0.tar.gz && rm -rf geneRxCluster.buildbin-libdir && mkdir geneRxCluster.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geneRxCluster.buildbin-libdir geneRxCluster_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL geneRxCluster_1.16.0.zip && rm geneRxCluster_1.16.0.tar.gz geneRxCluster_1.16.0.zip
###
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100 26467  100 26467    0     0   479k      0 --:--:-- --:--:-- --:--:--  549k

install for i386

* installing *source* package 'geneRxCluster' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c cluster.c -o cluster.o
cluster.c: In function 'cutptClean_new_elt':
cluster.c:80:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (*pvj!=NOTAIL)
      ^
cluster.c: In function 'gRxC_cluster':
cluster.c:682:2: warning: 'cutptFunRes' may be used uninitialized in this function [-Wmaybe-uninitialized]
  SET_VECTOR_ELT(final,2,cutptFunRes);
  ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o geneRxCluster.dll tmp.def cluster.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/geneRxCluster.buildbin-libdir/geneRxCluster/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'geneRxCluster'
    finding HTML links ... done
    critVal.alpha                           html  
    critVal.power                           html  
    critVal.target                          html  
    gRxCluster-object                       html  
    finding level-2 HTML links ... done

    gRxCluster                              html  
    gRxPlot                                 html  
    gRxPlotClumps                           html  
    gRxSummary                              html  
    geneRxCluster                           html  
    noprune                                 html  
    plot.cutpoints                          html  
    prune.loglik                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'geneRxCluster' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c cluster.c -o cluster.o
cluster.c: In function 'cutptClean_new_elt':
cluster.c:80:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (*pvj!=NOTAIL)
      ^
cluster.c: In function 'gRxC_cluster':
cluster.c:682:2: warning: 'cutptFunRes' may be used uninitialized in this function [-Wmaybe-uninitialized]
  SET_VECTOR_ELT(final,2,cutptFunRes);
  ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o geneRxCluster.dll tmp.def cluster.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/geneRxCluster.buildbin-libdir/geneRxCluster/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geneRxCluster' as geneRxCluster_1.16.0.zip
* DONE (geneRxCluster)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'geneRxCluster' successfully unpacked and MD5 sums checked
In R CMD INSTALL