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INSTALL report for flowPeaks on tokay2

This page was generated on 2018-10-17 08:36:19 -0400 (Wed, 17 Oct 2018).

Package 511/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.26.0
Yongchao Ge
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/flowPeaks
Branch: RELEASE_3_7
Last Commit: 303d6ba
Last Changed Date: 2018-04-30 10:35:25 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowPeaks
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowPeaks_1.26.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.26.0.zip && rm flowPeaks_1.26.0.tar.gz flowPeaks_1.26.0.zip
StartedAt: 2018-10-16 18:30:49 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:33:30 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 160.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowPeaks_1.26.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.26.0.zip && rm flowPeaks_1.26.0.tar.gz flowPeaks_1.26.0.zip
###
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install for i386

* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386/Rscript.exe" "../tools/winlibs.R"	
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c kmns.cpp -o kmns.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/i386 -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowPeaks'
    finding HTML links ... done
    adjust.flowPeaks                        html  
    assign.flowPeaks                        html  
    barcode                                 html  
    concave                                 html  
    evalCluster                             html  
    flowPeaks                               html  
    plot.flowPeaks                          html  
    print.flowPeaks                         html  
    summary.flowPeaks                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64/Rscript.exe" "../tools/winlibs.R"	
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=generic -c kmns.cpp -o kmns.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.26.0.zip
* DONE (flowPeaks)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked
In R CMD INSTALL