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INSTALL report for flowFP on tokay2

This page was generated on 2018-10-17 08:34:19 -0400 (Wed, 17 Oct 2018).

Package 506/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowFP 1.38.0
Herb Holyst
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/flowFP
Branch: RELEASE_3_7
Last Commit: f9ec8df
Last Changed Date: 2018-04-30 10:35:11 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowFP
Version: 1.38.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowFP_1.38.0.tar.gz && rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowFP.buildbin-libdir flowFP_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowFP_1.38.0.zip && rm flowFP_1.38.0.tar.gz flowFP_1.38.0.zip
StartedAt: 2018-10-16 19:17:20 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:18:21 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 60.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowFP_1.38.0.tar.gz && rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowFP.buildbin-libdir flowFP_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowFP_1.38.0.zip && rm flowFP_1.38.0.tar.gz flowFP_1.38.0.zip
###
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100 4456k  100 4456k    0     0  32.3M      0 --:--:-- --:--:-- --:--:-- 34.0M

install for i386

* installing *source* package 'flowFP' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c flowFP.c -o flowFP.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c split_utils.c -o split_utils.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o flowFP.dll tmp.def flowFP.o init.o split_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowFP.buildbin-libdir/flowFP/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'append' from package 'base' in package 'flowFP'
** help
*** installing help indices
  converting help for package 'flowFP'
    finding HTML links ... done
    append-methods                          html  
    binBoundary-methods                     html  
    counts-methods                          html  
    flowFP-class                            html  
    flowFP-package                          html  
    flowFP                                  html  
    flowFPModel-class                       html  
    flowFPModel                             html  
    flowFPPlex-class                        html  
    flowFPPlex                              html  
    fs1                                     html  
    fs2                                     html  
    hasClasses-methods                      html  
    index-methods                           html  
    is.flowFP                               html  
    is.flowFPModel                          html  
    is.flowFPPlex                           html  
    length-methods                          html  
    nFeatures-methods                       html  
    nInstances-methods                      html  
    nRecursions-methods                     html  
    name-methods                            html  
    parameters-methods                      html  
    plate                                   html  
    plot-methods                            html  
    sampleClasses-methods                   html  
    sampleNames-methods                     html  
    show-methods                            html  
    summary-methods                         html  
    tags-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowFP' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c flowFP.c -o flowFP.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c split_utils.c -o split_utils.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o flowFP.dll tmp.def flowFP.o init.o split_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/flowFP.buildbin-libdir/flowFP/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFP' as flowFP_1.38.0.zip
* DONE (flowFP)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'flowFP' successfully unpacked and MD5 sums checked
In R CMD INSTALL