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INSTALL report for diffloop on tokay2

This page was generated on 2018-10-17 08:42:16 -0400 (Wed, 17 Oct 2018).

Package 388/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
diffloop 1.8.0
Caleb Lareau
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/diffloop
Branch: RELEASE_3_7
Last Commit: 30215fe
Last Changed Date: 2018-04-30 10:35:42 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: diffloop
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/diffloop_1.8.0.tar.gz && rm -rf diffloop.buildbin-libdir && mkdir diffloop.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffloop.buildbin-libdir diffloop_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL diffloop_1.8.0.zip && rm diffloop_1.8.0.tar.gz diffloop_1.8.0.zip
StartedAt: 2018-10-16 19:54:16 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:55:53 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 96.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/diffloop_1.8.0.tar.gz && rm -rf diffloop.buildbin-libdir && mkdir diffloop.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffloop.buildbin-libdir diffloop_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL diffloop_1.8.0.zip && rm diffloop_1.8.0.tar.gz diffloop_1.8.0.zip
###
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100 1149k  100 1149k    0     0  17.1M      0 --:--:-- --:--:-- --:--:-- 19.0M

install for i386

* installing *source* package 'diffloop' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** help
*** installing help indices
  converting help for package 'diffloop'
    finding HTML links ... done
    addchr                                  html  
    annotateAnchors                         html  
    annotateAnchors.bed                     html  
    annotateAnchors.bigwig                  html  
    annotateLoops                           html  
    annotateLoops.dge                       html  
    bedToGRanges                            html  
    calcLDSizeFactors                       html  
    callCCDs                                html  
    computeBoundaryScores                   html  
    diffloop                                html  
    dim-loops-method                        html  
    featureTest                             html  
    filterLoops                             html  
    filterSpanningLoops                     html  
    geneinfo                                html  
    getHumanGenes                           html  
    getHumanTSS                             html  
    getMouseGenes                           html  
    getMouseTSS                             html  
    head-loops-method                       html  
    human.genes                             html  
    interchromosomal                        html  
    intrachromosomal                        html  
    keepCTCFloops                           html  
    keepEPloops                             html  
    loopAssoc                               html  
    loopDistancePlot                        html  
    loopGenes                               html  
    loopMetrics                             html  
    loopPlot                                html  
    loopWidth                               html  
    loops-class                             html  
    loops.small                             html  
    loopsMake                               html  
    loopsMake.mango                         html  
    loopsSubset                             html  
    mangoCorrection                         html  
    manyLoopPlots                           html  
    mergeAnchors                            html  
    numAnchors                              html  
    numLoops                                html  
    padGRanges                              html  
    pcaPlot                                 html  
    plotTopLoops                            html  
    quickAssoc                              html  
    quickAssocVoom                          html  
    removeRegion                            html  
    removeSelfLoops                         html  
    rmchr                                   html  
    sampleNames-loops-method                html  
    slidingWindowTest                       html  
    splitSamples                            html  
    sub-loops-numeric-numeric-missing-method
                                            html  
    subsetLoops                             html  
    subsetRegion                            html  
    subsetRegionAB                          html  
    summary-loops-method                    html  
    tail-loops-method                       html  
    topLoops                                html  
    union-loops-loops-method                html  
    updateLDGroups                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
In R CMD INSTALL

install for x64

* installing *source* package 'diffloop' ...
** testing if installed package can be loaded
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
* MD5 sums
packaged installation of 'diffloop' as diffloop_1.8.0.zip
* DONE (diffloop)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'diffloop' successfully unpacked and MD5 sums checked
In R CMD INSTALL