Back to Multiple platform build/check report for BioC 3.7
ABCDEFGHIJKLMNOPQRST[U]VWXYZ

INSTALL report for Uniquorn on tokay2

This page was generated on 2018-10-17 08:41:49 -0400 (Wed, 17 Oct 2018).

Package 1527/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Uniquorn 2.0.0
'Raik Otto'
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/Uniquorn
Branch: RELEASE_3_7
Last Commit: 8d58b71
Last Changed Date: 2018-04-30 10:35:40 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Uniquorn
Version: 2.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Uniquorn_2.0.0.tar.gz && rm -rf Uniquorn.buildbin-libdir && mkdir Uniquorn.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Uniquorn.buildbin-libdir Uniquorn_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Uniquorn_2.0.0.zip && rm Uniquorn_2.0.0.tar.gz Uniquorn_2.0.0.zip
StartedAt: 2018-10-16 20:07:38 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:08:45 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 67.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Uniquorn_2.0.0.tar.gz && rm -rf Uniquorn.buildbin-libdir && mkdir Uniquorn.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Uniquorn.buildbin-libdir Uniquorn_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Uniquorn_2.0.0.zip && rm Uniquorn_2.0.0.tar.gz Uniquorn_2.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2342k  100 2342k    0     0  30.2M      0 --:--:-- --:--:-- --:--:-- 33.6M

install for i386

* installing *source* package 'Uniquorn' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'create_bed_file(match_t, ': unused argument (manual_identifier_bed_file) 
** help
*** installing help indices
  converting help for package 'Uniquorn'
    finding HTML links ... done
    add_custom_vcf_to_database              html  
    add_missing_cls                         html  
    add_p_q_values_statistics               html  
    add_penality_statistics                 html  
    create_bed_file                         html  
    identify_vcf_file                       html  
    init_and_load_identification            html  
    initiate_canonical_databases            html  
    match_query_ccl_to_database             html  
    parse_ccle_genotype_data                html  
    parse_cosmic_genotype_data              html  
    parse_vcf_file                          html  
    parse_vcf_query_into_db                 html  
    read_library_names                      html  
    read_mutation_grange_objects            html  
    remove_ccls_from_database               html  
    remove_library_from_database            html  
    show_contained_ccls                     html  
    show_contained_variants_for_ccl         html  
    show_contained_variants_in_library      html  
    show_which_ccls_contain_variant         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Uniquorn' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Uniquorn' as Uniquorn_2.0.0.zip
* DONE (Uniquorn)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'Uniquorn' successfully unpacked and MD5 sums checked
In R CMD INSTALL