Damian Szklarczyk
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/STRINGdb |
| Branch: RELEASE_3_7 |
| Last Commit: f21cc9d |
| Last Changed Date: 2018-04-30 10:35:31 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:37:45 -0400 (Wed, 17 Oct 2018).
| Package 1442/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| STRINGdb 1.20.0 Damian Szklarczyk
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: STRINGdb |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/STRINGdb_1.20.0.tar.gz && rm -rf STRINGdb.buildbin-libdir && mkdir STRINGdb.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=STRINGdb.buildbin-libdir STRINGdb_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL STRINGdb_1.20.0.zip && rm STRINGdb_1.20.0.tar.gz STRINGdb_1.20.0.zip |
| StartedAt: 2018-10-16 19:16:17 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:17:32 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 74.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/STRINGdb_1.20.0.tar.gz && rm -rf STRINGdb.buildbin-libdir && mkdir STRINGdb.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=STRINGdb.buildbin-libdir STRINGdb_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL STRINGdb_1.20.0.zip && rm STRINGdb_1.20.0.tar.gz STRINGdb_1.20.0.zip
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install for i386
* installing *source* package 'STRINGdb' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'spinglass.community(get_subnetwork(string_ids), ': unused arguments (merges = TRUE, modularity = TRUE)
** help
*** installing help indices
converting help for package 'STRINGdb'
finding HTML links ... done
STRINGdb-class html
add_diff_exp_color html
add_proteins_description html
benchmark_ppi html
benchmark_ppi_pathway_view html
coeffOfvar html
delColDf html
diff_exp_example1 html
downloadAbsentFile html
downloadAbsentFileSTRING html
get_STRING_species html
get_aliases html
get_annotations html
get_annotations_desc html
get_bioc_graph html
get_clusters html
get_enrichment html
get_graph html
get_homologs html
get_homologs_besthits html
get_interactions html
get_link html
get_neighbors html
get_png html
get_ppi_enrichment html
get_ppi_enrichment_full html
get_proteins html
get_pubmed html
get_pubmed_interaction html
get_subnetwork html
get_summary html
get_term_proteins html
interactions html
load html
load_all html
map html
mp html
multi_map_df html
plot_network html
plot_ppi_enrichment html
plot_ppi_enrichment_graph html
post_payload html
ppi_enrichment html
ppi_enrichment_full html
ppie.compLambda html
ppie.compLambdaL1L2 html
ppie.compPij html
ppie.getNumEdgesBetween html
remove_homologous_interactions html
renameColDf html
set_background html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'STRINGdb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'STRINGdb' as STRINGdb_1.20.0.zip
* DONE (STRINGdb)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'STRINGdb' successfully unpacked and MD5 sums checked
In R CMD INSTALL