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INSTALL report for SIM on tokay2

This page was generated on 2018-10-17 08:33:53 -0400 (Wed, 17 Oct 2018).

Package 1373/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIM 1.50.0
Renee X. de Menezes
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/SIM
Branch: RELEASE_3_7
Last Commit: ec37a3e
Last Changed Date: 2018-04-30 10:35:09 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SIM
Version: 1.50.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SIM_1.50.0.tar.gz && rm -rf SIM.buildbin-libdir && mkdir SIM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIM.buildbin-libdir SIM_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SIM_1.50.0.zip && rm SIM_1.50.0.tar.gz SIM_1.50.0.zip
StartedAt: 2018-10-16 19:07:49 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:08:45 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SIM_1.50.0.tar.gz && rm -rf SIM.buildbin-libdir && mkdir SIM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIM.buildbin-libdir SIM_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SIM_1.50.0.zip && rm SIM_1.50.0.tar.gz SIM_1.50.0.zip
###
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install for i386

* installing *source* package 'SIM' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c withinWindow.c -o withinWindow.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/SIM.buildbin-libdir/SIM/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SIM'
    finding HTML links ... done
    RESOURCERER.annotation.to.ID            html  
    SIM-package                             html  
    acgh.data                               html  
    assemble.data                           html  
    chrom.table                             html  
    expr.data                               html  
    getoverlappingregions                   html  
    impute.nas.by.surrounding               html  
    integrated.analysis                     html  
    link.metadata                           html  
    samples                                 html  
    sim.plot.overlapping.indep.dep.features
                                            html  
    sim.plot.pvals.on.genome                html  
    sim.plot.pvals.on.region                html  
    sim.plot.zoom.in                        html  
    sim.plot.zscore.heatmap                 html  
    sim.update.chrom.table                  html  
    tabulate.pvals                          html  
    tabulate.top.dep.features               html  
    tabulate.top.indep.features             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SIM' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c withinWindow.c -o withinWindow.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/SIM.buildbin-libdir/SIM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIM' as SIM_1.50.0.zip
* DONE (SIM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SIM' successfully unpacked and MD5 sums checked
In R CMD INSTALL