Back to Multiple platform build/check report for BioC 3.7
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

INSTALL report for RTCGA on tokay2

This page was generated on 2018-10-17 08:41:04 -0400 (Wed, 17 Oct 2018).

Package 1289/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTCGA 1.10.0
Marcin Kosinski
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/RTCGA
Branch: RELEASE_3_7
Last Commit: c4df3db
Last Changed Date: 2018-04-30 10:35:38 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTCGA
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RTCGA_1.10.0.tar.gz && rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.10.0.zip && rm RTCGA_1.10.0.tar.gz RTCGA_1.10.0.zip
StartedAt: 2018-10-16 20:11:13 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:12:31 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 77.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RTCGA_1.10.0.tar.gz && rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.10.0.zip && rm RTCGA_1.10.0.tar.gz RTCGA_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2434k  100 2434k    0     0  29.9M      0 --:--:-- --:--:-- --:--:-- 33.0M

install for i386

* installing *source* package 'RTCGA' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTCGA'
    finding HTML links ... done
    RTCGA-package                           html  
    boxplotTCGA                             html  
    finding level-2 HTML links ... done

    checkTCGA                               html  
    convertTCGA                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCYwpeC/R.INSTALL23183fd15232/RTCGA/man/convertTCGA.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCYwpeC/R.INSTALL23183fd15232/RTCGA/man/convertTCGA.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCYwpeC/R.INSTALL23183fd15232/RTCGA/man/convertTCGA.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCYwpeC/R.INSTALL23183fd15232/RTCGA/man/convertTCGA.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCYwpeC/R.INSTALL23183fd15232/RTCGA/man/convertTCGA.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpCYwpeC/R.INSTALL23183fd15232/RTCGA/man/convertTCGA.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    datasetsTCGA                            html  
    downloadTCGA                            html  
    expressionsTCGA                         html  
    heatmapTCGA                             html  
    infoTCGA                                html  
    installTCGA                             html  
    kmTCGA                                  html  
    mutationsTCGA                           html  
    pcaTCGA                                 html  
    readTCGA                                html  
    survivalTCGA                            html  
    theme_RTCGA                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'RTCGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA' as RTCGA_1.10.0.zip
* DONE (RTCGA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'RTCGA' successfully unpacked and MD5 sums checked
In R CMD INSTALL