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INSTALL report for RNAither on tokay2

This page was generated on 2018-10-17 08:34:00 -0400 (Wed, 17 Oct 2018).

Package 1257/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAither 2.28.0
Lars Kaderali
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/RNAither
Branch: RELEASE_3_7
Last Commit: 2546ea5
Last Changed Date: 2018-04-30 10:35:10 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RNAither
Version: 2.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RNAither_2.28.0.tar.gz && rm -rf RNAither.buildbin-libdir && mkdir RNAither.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RNAither.buildbin-libdir RNAither_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RNAither_2.28.0.zip && rm RNAither_2.28.0.tar.gz RNAither_2.28.0.zip
StartedAt: 2018-10-16 20:15:46 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:18:30 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 163.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RNAither_2.28.0.tar.gz && rm -rf RNAither.buildbin-libdir && mkdir RNAither.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RNAither.buildbin-libdir RNAither_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RNAither_2.28.0.zip && rm RNAither_2.28.0.tar.gz RNAither_2.28.0.zip
###
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install for i386

* installing *source* package 'RNAither' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'RNAither'
    finding HTML links ... done
    BScore                                  html  
    DRQualControl                           html  
    LiWongRank                              html  
    MannWhitney                             html  
    RNAither-package                        html  
    RankProduct                             html  
    SNRQualControl                          html  
    Ttest                                   html  
    ZPRIMEQualControl                       html  
    ZScore                                  html  
    ZScorePerScreen                         html  
    ZScorePlot                              html  
    ZScorePlotTwo                           html  
    channelPlot                             html  
    closestToZero                           html  
    compareHits                             html  
    compareReplicaPlates                    html  
    compareReplicateSD                      html  
    compareReplicateSDPerScreen             html  
    compareReplicates                       html  
    controlDensity                          html  
    controlDensityPerPlate                  html  
    controlDensityPerScreen                 html  
    controlNorm                             html  
    createSubset                            html  
    dataset                                 html  
    datasetDrosophila                       html  
    discardLabtek                           html  
    discardWells                            html  
    divNorm                                 html  
    divideChannels                          html  
    eraseDataSetColumn                      html  
    findReplicates                          html  
    furthestFromZero                        html  
    generateDatasetFile                     html  
    generateRepMatNoFilter                  html  
    generateReplicateMat                    html  
    gseaAnalysis                            html  
    header                                  html  
    headerDrosophila                        html  
    hitselectionPval                        html  
    hitselectionZscore                      html  
    hitselectionZscorePval                  html  
    incorporatepValVec                      html  
    indexSubset                             html  
    joinDatasetFiles                        html  
    joinDatasets                            html  
    lowessNorm                              html  
    mainAnalysis                            html  
    makeBoxplot4PlateType                   html  
    makeBoxplotControls                     html  
    makeBoxplotControlsPerPlate             html  
    makeBoxplotControlsPerScreen            html  
    makeBoxplotPerPlate                     html  
    makeBoxplotPerScreen                    html  
    multTestAdjust                          html  
    numCellQualControl                      html  
    orderGeneIDs                            html  
    pValVec1                                html  
    pValVec2                                html  
    percCellQualControl                     html  
    plotBar                                 html  
    plotControlHisto                        html  
    plotControlHistoPerplate                html  
    plotControlHistoPerscreen               html  
    plotHisto                               html  
    plotHistoPerplate                       html  
    plotHistoPerscreen                      html  
    plotQQ                                  html  
    plotQQperplate                          html  
    plotQQperscreen                         html  
    quantileNormalization                   html  
    replicatesCV                            html  
    replicatesSpearmancor                   html  
    rms                                     html  
    rnaither                                html  
    saveDataset                             html  
    saveOldIntensityColumns                 html  
    savepValVec                             html  
    scoredDataset1                          html  
    scoredDataset2                          html  
    spatialDistrib                          html  
    spatialDistribHits                      html  
    subtractBackground                      html  
    sumChannels                             html  
    summarizeReps                           html  
    summarizeRepsNoFiltering                html  
    trim                                    html  
    varAdjust                               html  
    vennDiag                                html  
    volcanoPlot                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
In R CMD INSTALL

install for x64

* installing *source* package 'RNAither' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'RNAither' as RNAither_2.28.0.zip
* DONE (RNAither)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'RNAither' successfully unpacked and MD5 sums checked
In R CMD INSTALL