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INSTALL report for RCy3 on tokay2

This page was generated on 2018-10-17 08:41:17 -0400 (Wed, 17 Oct 2018).

Package 1201/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCy3 2.0.88
Alexander Pico , Tanja Muetze , Paul Shannon
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/RCy3
Branch: RELEASE_3_7
Last Commit: fa8a68d
Last Changed Date: 2018-08-10 19:36:47 -0400 (Fri, 10 Aug 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RCy3
Version: 2.0.88
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RCy3_2.0.88.tar.gz && rm -rf RCy3.buildbin-libdir && mkdir RCy3.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCy3.buildbin-libdir RCy3_2.0.88.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RCy3_2.0.88.zip && rm RCy3_2.0.88.tar.gz RCy3_2.0.88.zip
StartedAt: 2018-10-16 18:53:38 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:56:36 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 177.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RCy3_2.0.88.tar.gz && rm -rf RCy3.buildbin-libdir && mkdir RCy3.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCy3.buildbin-libdir RCy3_2.0.88.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RCy3_2.0.88.zip && rm RCy3_2.0.88.tar.gz RCy3_2.0.88.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  700k  100  700k    0     0  10.7M      0 --:--:-- --:--:-- --:--:-- 11.9M

install for i386

* installing *source* package 'RCy3' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RCy3'
    finding HTML links ... done
    AddToGroup                              html  
    CytoscapeConnection-deprecated          html  
    CytoscapeWindow-deprecated              html  
    RCy3                                    html  
    RemoveFromGroup                         html  
    addCyEdge-defunct                       html  
    addCyEdges                              html  
    addCyNode-defunct                       html  
    addCyNodes                              html  
    addGraphToGraph-defunct                 html  
    clearEdgePropertyBypass                 html  
    clearNetworkCenterBypass                html  
    clearNetworkPropertyBypass              html  
    clearNetworkZoomBypass                  html  
    clearNodeOpacityBypass                  html  
    clearNodePropertyBypass                 html  
    clearSelection                          html  
    cloneNetwork                            html  
    closeSession                            html  
    collapseGroup                           html  
    commandEcho                             html  
    commandOpenDialog                       html  
    commandPause                            html  
    commandQuit                             html  
    commandRunFile                          html  
    commandSleep                            html  
    commandsAPI                             html  
    commandsGET                             html  
    commandsHelp                            html  
    commandsPOST                            html  
    commandsRun                             html  
    connectToNewestCyWindow-defunct         html  
    copyCytoscapeNetwork-deprecated         html  
    copyVisualStyle                         html  
    createGraphFromNetwork                  html  
    createGroup                             html  
    createIgraphFromNetwork                 html  
    createNetworkFromDataFrames             html  
    createNetworkFromGraph                  html  
    createNetworkFromIgraph                 html  
    createSubnetwork                        html  
    createVisualStyle                       html  
    createWindow-deprecated                 html  
    createWindowFromSelection-deprecated    html  
    cy2.edge.names-defunct                  html  
    cyPlot-defunct                          html  
    cybrowserClose                          html  
    cybrowserDialog                         html  
    cybrowserHide                           html  
    cybrowserList                           html  
    cybrowserSend                           html  
    cybrowserShow                           html  
    cybrowserVersion                        html  
    cyrestAPI                               html  
    cyrestDELETE                            html  
    cyrestGET                               html  
    cyrestPOST                              html  
    cyrestPUT                               html  
    cytoscapeApiVersions                    html  
    cytoscapeFreeMemory                     html  
    cytoscapeMemoryStatus                   html  
    cytoscapeNumberOfCores                  html  
    cytoscapePing                           html  
    cytoscapeVersionInfo                    html  
    deleteAllNetworks                       html  
    deleteAllWindows-deprecated             html  
    deleteEdgeAttribute-deprecated          html  
    deleteGroup                             html  
    deleteNetwork                           html  
    deleteNodeAttribute-deprecated          html  
    deleteSelectedEdges                     html  
    deleteSelectedNodes                     html  
    deleteTableColumn                       html  
    deleteWindow-deprecated                 html  
    demoSimpleGraph-defunct                 html  
    diffusionAdvanced                       html  
    diffusionBasic                          html  
    disableApp                              html  
    displayGraph-defunct                    html  
    dockPanel                               html  
    eda-defunct                             html  
    eda.names-defunct                       html  
    enableApp                               html  
    existing.CytoscapeWindow-deprecated     html  
    expandGroup                             html  
    exportImage                             html  
    exportNetwork                           html  
    exportNetworkToNDEx                     html  
    exportVisualStyles                      html  
    fitContent                              html  
    fitSelectedContent-deprecated           html  
    floatPanel                              html  
    getAdjacentEdgeNames-defunct            html  
    getAllEdgeAttributes-deprecated         html  
    getAllEdges                             html  
    getAllNodeAttributes-deprecated         html  
    getAllNodes                             html  
    getAppInformation                       html  
    getAppStatus                            html  
    getAppUpdates                           html  
    getArrowShapes                          html  
    getAttributeClassNames-defunct          html  
    getAvailableApps                        html  
    getBackgroundColorDefault               html  
    getCenter-deprecated                    html  
    getCollectionList                       html  
    getCollectionName                       html  
    getCollectionNetworks                   html  
    getCollectionSuid                       html  
    getCommandNames-deprecated              html  
    getCommandNamesWithinNamespace-deprecated
                                            html  
    getDefaultEdgeReverseSelectionColor-defunct
                                            html  
    getDefaultNodeReverseSelectionColor-defunct
                                            html  
    getDirectlyModifiableVisualProperties-deprecated
                                            html  
    getDisabledApps                         html  
    getEdgeAttribute-deprecated             html  
    getEdgeAttributeNames-deprecated        html  
    getEdgeColor                            html  
    getEdgeCount                            html  
    getEdgeLineStyle                        html  
    getEdgeLineWidth                        html  
    getEdgeProperty                         html  
    getEdgeSelectionColorDefault            html  
    getEdgeTargetArrowShape                 html  
    getFirstNeighbors                       html  
    getGraph-defunct                        html  
    getGraphFromCyWindow-deprecated         html  
    getGroupInfo                            html  
    getInstalledApps                        html  
    getLayoutNameMapping                    html  
    getLayoutNames                          html  
    getLayoutPropertyNames                  html  
    getLayoutPropertyType                   html  
    getLayoutPropertyValue                  html  
    getLineStyles                           html  
    getNetworkCenter                        html  
    getNetworkCount                         html  
    getNetworkList                          html  
    getNetworkNDExId                        html  
    getNetworkName                          html  
    getNetworkProperty                      html  
    getNetworkSuid                          html  
    getNetworkViewSuid                      html  
    getNetworkViews                         html  
    getNetworkZoom                          html  
    getNodeAttribute-deprecated             html  
    getNodeAttributeNames-deprecated        html  
    getNodeColor                            html  
    getNodeCount                            html  
    getNodeHeight                           html  
    getNodePosition-defunct                 html  
    getNodeProperty                         html  
    getNodeSelectionColorDefault            html  
    getNodeShapes                           html  
    getNodeSize                             html  
    getNodeWidth                            html  
    getSelectedEdgeCount                    html  
    getSelectedEdges                        html  
    getSelectedNodeCount                    html  
    getSelectedNodes                        html  
    getStyleDependencies                    html  
    getTableColumnNames                     html  
    getTableColumnTypes                     html  
    getTableColumns                         html  
    getTableValue                           html  
    getUninstalledApps                      html  
    getViewCoordinates-defunct              html  
    getVisualPropertyDefault                html  
    getVisualPropertyNames                  html  
    getVisualStyleNames                     html  
    getWindowCount-deprecated               html  
    getWindowID-deprecated                  html  
    getWindowList-deprecated                html  
    getZoom-deprecated                      html  
    hideAllPanels                           html  
    hideEdges                               html  
    hideNodes                               html  
    hidePanel                               html  
    hideSelectedEdges                       html  
    hideSelectedNodes                       html  
    importNetworkFromFile                   html  
    importNetworkFromNDEx                   html  
    initEdgeAttribute-defunct               html  
    initNodeAttribute-defunct               html  
    installApp                              html  
    invertEdgeSelection                     html  
    invertNodeSelection                     html  
    layoutCopycat                           html  
    layoutNetwork                           html  
    listGroups                              html  
    loadTableData                           html  
    lockNodeDimensions                      html  
    makeRandomGraph-defunct                 html  
    makeSimpleGraph                         html  
    makeSimpleIgraph                        html  
    mapTableColumn                          html  
    mapVisualProperty                       html  
    matchArrowColorToEdge                   html  
    noa-defunct                             html  
    noa.names-defunct                       html  
    openAppStore                            html  
    openSession                             html  
    ping-deprecated                         html  
    pluginVersion-deprecated                html  
    predictTimeToDisplayGraph-defunct       html  
    raiseWindow-defunct                     html  
    redraw-deprecated                       html  
    renameCytoscapeNetwork-deprecated       html  
    renameNetwork                           html  
    renameTableColumn                       html  
    restoreLayout-defunct                   html  
    saveImage-deprecated                    html  
    saveLayout-defunct                      html  
    saveNetwork-deprecated                  html  
    saveSession                             html  
    selectAllEdges                          html  
    selectAllNodes                          html  
    selectEdges                             html  
    selectEdgesAdjacentToSelectedNodes      html  
    selectEdgesConnectedBySelectedNodes-deprecated
                                            html  
    selectEdgesConnectingSelectedNodes      html  
    selectFirstNeighbors                    html  
    selectFirstNeighborsOfSelectedNodes-deprecated
                                            html  
    selectNodes                             html  
    sendEdges-defunct                       html  
    sendNodes-defunct                       html  
    setBackgroundColorDefault               html  
    setCenter-deprecated                    html  
    setCommandProperties-defunct            html  
    setCurrentNetwork                       html  
    setCurrentView                          html  
    setDefaultEdgeReverseSelectionColor-defunct
                                            html  
    setDefaultNodeReverseSelectionColor-defunct
                                            html  
    setEdgeAttributes-defunct               html  
    setEdgeColorBypass                      html  
    setEdgeColorDefault                     html  
    setEdgeColorMapping                     html  
    setEdgeFontFaceBypass                   html  
    setEdgeFontSizeBypass                   html  
    setEdgeFontSizeDefault                  html  
    setEdgeLabelBypass                      html  
    setEdgeLabelColorBypass                 html  
    setEdgeLabelMapping                     html  
    setEdgeLabelOpacityBypass               html  
    setEdgeLineStyleBypass                  html  
    setEdgeLineStyleDefault                 html  
    setEdgeLineStyleMapping                 html  
    setEdgeLineWidthBypass                  html  
    setEdgeLineWidthDefault                 html  
    setEdgeLineWidthMapping                 html  
    setEdgeOpacityBypass                    html  
    setEdgeOpacityMapping                   html  
    setEdgePropertyBypass                   html  
    setEdgeSelectionColorDefault            html  
    setEdgeSourceArrowColorBypass           html  
    setEdgeSourceArrowColorDefault          html  
    setEdgeSourceArrowColorMapping          html  
    setEdgeSourceArrowMapping               html  
    setEdgeSourceArrowShapeBypass           html  
    setEdgeSourceArrowShapeDefault          html  
    setEdgeTargetArrowColorBypass           html  
    setEdgeTargetArrowColorDefault          html  
    setEdgeTargetArrowColorMapping          html  
    setEdgeTargetArrowMapping               html  
    setEdgeTargetArrowShapeBypass           html  
    setEdgeTargetArrowShapeDefault          html  
    setEdgeTooltipBypass                    html  
    setEdgeTooltipMapping                   html  
    setGraph-defunct                        html  
    setLayoutProperties                     html  
    setNetworkCenterBypass                  html  
    setNetworkPropertyBypass                html  
    setNetworkZoomBypass                    html  
    setNodeAttributes-defunct               html  
    setNodeBorderColorBypass                html  
    setNodeBorderColorDefault               html  
    setNodeBorderColorMapping               html  
    setNodeBorderOpacityBypass              html  
    setNodeBorderWidthBypass                html  
    setNodeBorderWidthDefault               html  
    setNodeBorderWidthMapping               html  
    setNodeColorBypass                      html  
    setNodeColorDefault                     html  
    setNodeColorMapping                     html  
    setNodeComboOpacityMapping              html  
    setNodeFillOpacityBypass                html  
    setNodeFontSizeBypass                   html  
    setNodeFontSizeDefault                  html  
    setNodeHeightBypass                     html  
    setNodeLabelBypass                      html  
    setNodeLabelColorBypass                 html  
    setNodeLabelColorDefault                html  
    setNodeLabelMapping                     html  
    setNodeLabelOpacityBypass               html  
    setNodeOpacityBypass                    html  
    setNodePosition-defunct                 html  
    setNodePropertyBypass                   html  
    setNodeSelectionColorDefault            html  
    setNodeShapeBypass                      html  
    setNodeShapeDefault                     html  
    setNodeShapeMapping                     html  
    setNodeSizeBypass                       html  
    setNodeSizeDefault                      html  
    setNodeSizeMapping                      html  
    setNodeTooltipMapping                   html  
    setNodeWidthBypass                      html  
    setStyleDependencies                    html  
    setTooltipDismissDelay-defunct          html  
    setTooltipInitialDelay-defunct          html  
    setVisualPropertyDefault                html  
    setVisualStyle                          html  
    setWindowSize-defunct                   html  
    setZoom-deprecated                      html  
    sfn-deprecated                          html  
    showGraphicsDetails-deprecated          html  
    syncNodeCustomGraphicsSize              html  
    toggleGraphicsDetails                   html  
    unhideAll                               html  
    unhideEdges                             html  
    unhideNodes                             html  
    uninstallApp                            html  
    updateApp                               html  
    updateNetworkInNDEx                     html  
    updateStyleDefaults                     html  
    updateStyleMapping                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'RCy3' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCy3' as RCy3_2.0.88.zip
* DONE (RCy3)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'RCy3' successfully unpacked and MD5 sums checked
In R CMD INSTALL