Package: PCpheno

Version: 1.42.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/PCpheno_1.42.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.42.0.zip && rm PCpheno_1.42.0.tar.gz PCpheno_1.42.0.zip

StartedAt: 2018-10-16 19:50:29 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 19:51:23 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 54.7 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/PCpheno_1.42.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.42.0.zip && rm PCpheno_1.42.0.tar.gz PCpheno_1.42.0.zip
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install for i386

* installing *source* package 'PCpheno' ...
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
  converting help for package 'PCpheno'
    finding HTML links ... done
    CoHyperGParams-class                    html  
    CoHyperGResult-class                    html  
    Dudley                                  html  
    Giaever                                 html  
    HI                                      html  
    KEGG2SCISI                              html  
    Kastenmayer                             html  
    Lesage                                  html  
    Osterberg                               html  
    PCpheno.package                         html  
    SGDphenoL                               html  
    YEASTOHNOLOG                            html  
    buildFDMat                              html  
    categoryToEntrezBuilder                 html  
    complexStatus                           html  
    deResult-class                          html  
    densityEstimate                         html  
    getDescr                                html  
    getFDgene                               html  
    graphTheory                             html  
    gtResult-class                          html  
    overlap                                 html  
    plot                                    html  
    ppiInteraction                          html  
    reduceM                                 html  
    testResult-class                        html  
    truncName                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
In R CMD INSTALL

install for x64

* installing *source* package 'PCpheno' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
* MD5 sums
packaged installation of 'PCpheno' as PCpheno_1.42.0.zip
* DONE (PCpheno)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'PCpheno' successfully unpacked and MD5 sums checked
In R CMD INSTALL