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INSTALL report for MutationalPatterns on tokay2

This page was generated on 2018-10-17 08:43:04 -0400 (Wed, 17 Oct 2018).

Package 970/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MutationalPatterns 1.6.1
Roel Janssen
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/MutationalPatterns
Branch: RELEASE_3_7
Last Commit: 3254faa
Last Changed Date: 2018-10-11 04:00:18 -0400 (Thu, 11 Oct 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MutationalPatterns
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/MutationalPatterns_1.6.1.tar.gz && rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL MutationalPatterns_1.6.1.zip && rm MutationalPatterns_1.6.1.tar.gz MutationalPatterns_1.6.1.zip
StartedAt: 2018-10-16 20:18:50 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:20:16 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 85.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/MutationalPatterns_1.6.1.tar.gz && rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL MutationalPatterns_1.6.1.zip && rm MutationalPatterns_1.6.1.tar.gz MutationalPatterns_1.6.1.zip
###
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100 3135k  100 3135k    0     0  34.8M      0 --:--:-- --:--:-- --:--:-- 38.2M

install for i386

* installing *source* package 'MutationalPatterns' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MutationalPatterns'
    finding HTML links ... done
    MutationalPatterns-package              html  
    binomial_test                           html  
    cluster_signatures                      html  
    cos_sim                                 html  
    cos_sim_matrix                          html  
    enrichment_depletion_test               html  
    explained_by_signatures                 html  
    extract_signatures                      html  
    fit_to_signatures                       html  
    genomic_distribution                    html  
    mut_context                             html  
    mut_matrix                              html  
    mut_matrix_stranded                     html  
    mut_strand                              html  
    mut_type                                html  
    mut_type_occurrences                    html  
    mutation_context                        html  
    mutation_types                          html  
    mutations_from_vcf                      html  
    plot_192_profile                        html  
    plot_96_profile                         html  
    plot_compare_profiles                   html  
    plot_contribution                       html  
    plot_contribution_heatmap               html  
    plot_cosine_heatmap                     html  
    plot_enrichment_depletion               html  
    plot_rainfall                           html  
    plot_signature_strand_bias              html  
    plot_spectrum                           html  
    plot_strand                             html  
    plot_strand_bias                        html  
    read_vcfs_as_granges                    html  
    strand_bias_test                        html  
    strand_from_vcf                         html  
    strand_occurrences                      html  
    type_context                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MutationalPatterns' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MutationalPatterns' as MutationalPatterns_1.6.1.zip
* DONE (MutationalPatterns)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'MutationalPatterns' successfully unpacked and MD5 sums checked
In R CMD INSTALL