Package: MCbiclust

Version: 1.4.0

Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MCbiclust.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings MCbiclust_1.4.0.tar.gz

StartedAt: 2018-10-17 03:07:09 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 03:20:47 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 818.6 seconds

RetCode: 0

Status:  OK

CheckDir: MCbiclust.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MCbiclust.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings MCbiclust_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/MCbiclust.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MCbiclust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MCbiclust' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MCbiclust' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
SilhouetteClustGroups 50.62   4.20   55.14
CVPlot                32.61   1.20   33.81
ThresholdBic          14.16   1.70   16.28
CVEval                13.11   1.36   14.91
PC1VecFun             13.03   1.28   14.84
PointScoreCalc        12.38   1.22   13.85
SampleSort            12.36   1.24   14.06
GOEnrichmentAnalysis   8.79   0.41    9.20
HclustGenesHiCor       5.44   0.45    5.89
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
SilhouetteClustGroups 76.61   4.47   81.58
CVPlot                44.97   1.36   46.34
PC1VecFun             20.41   2.08   23.38
PointScoreCalc        20.27   1.97   22.70
CVEval                20.02   1.71   22.15
SampleSort            19.93   1.70   22.14
ThresholdBic          15.86   1.76   18.06
GOEnrichmentAnalysis  16.19   0.62   16.81
CorScoreCalc           9.64   0.46   10.14
FindSeed               8.75   0.61    9.36
HclustGenesHiCor       8.59   0.58    9.17
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/MCbiclust_1.4.0.tar.gz && rm -rf MCbiclust.buildbin-libdir && mkdir MCbiclust.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MCbiclust.buildbin-libdir MCbiclust_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL MCbiclust_1.4.0.zip && rm MCbiclust_1.4.0.tar.gz MCbiclust_1.4.0.zip
###
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install for i386

* installing *source* package 'MCbiclust' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MCbiclust'
    finding HTML links ... done
    CCLE_samples                            html  
    CCLE_small                              html  
    CVEval                                  html  
    CVPlot                                  html  
    CorScoreCalc                            html  
    FindSeed                                html  
    GOEnrichmentAnalysis                    html  
    HclustGenesHiCor                        html  
    MCbiclust                               html  
    Mitochondrial_genes                     html  
    PC1VecFun                               html  
    PointScoreCalc                          html  
    SampleSort                              html  
    SilhouetteClustGroups                   html  
    ThresholdBic                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MCbiclust' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MCbiclust' as MCbiclust_1.4.0.zip
* DONE (MCbiclust)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'MCbiclust' successfully unpacked and MD5 sums checked
In R CMD INSTALL

R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library(testthat)
> library(MCbiclust)


> 
> test_check("MCbiclust")
== testthat results  ===========================================================
OK: 23 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  87.96    2.23   90.60 

R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> Sys.setenv("R_TESTS" = "")
> 
> library(testthat)
> library(MCbiclust)


> 
> test_check("MCbiclust")
== testthat results  ===========================================================
OK: 23 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  85.76    2.04   88.25