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INSTALL report for GlobalAncova on tokay2

This page was generated on 2018-10-17 08:32:37 -0400 (Wed, 17 Oct 2018).

Package 621/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GlobalAncova 3.48.0
Manuela Hummel
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GlobalAncova
Branch: RELEASE_3_7
Last Commit: bb788b4
Last Changed Date: 2018-04-30 10:35:03 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GlobalAncova
Version: 3.48.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GlobalAncova_3.48.0.tar.gz && rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GlobalAncova.buildbin-libdir GlobalAncova_3.48.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GlobalAncova_3.48.0.zip && rm GlobalAncova_3.48.0.tar.gz GlobalAncova_3.48.0.zip
StartedAt: 2018-10-16 19:07:44 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:08:30 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 45.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GlobalAncova_3.48.0.tar.gz && rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GlobalAncova.buildbin-libdir GlobalAncova_3.48.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GlobalAncova_3.48.0.zip && rm GlobalAncova_3.48.0.tar.gz GlobalAncova_3.48.0.zip
###
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install for i386

* installing *source* package 'GlobalAncova' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
   int *ord_perm ;
        ^
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
   int *ord_perm ;
        ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ludcmp.c -o ludcmp.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c matrix.c -o matrix.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GlobalAncova'
    finding HTML links ... done
    GlobalAncova-methods                    html  
    GlobalAncova                            html  
    GlobalAncova.closed-methods             html  
    GlobalAncova.closed                     html  
    GlobalAncova.decomp                     html  
    Plot.all                                html  
    Plot.genes-methods                      html  
    Plot.genes                              html  
    Plot.sequential                         html  
    Plot.subjects-methods                   html  
    Plot.subjects                           html  
    colon.normal                            html  
    colon.pheno                             html  
    colon.tumour                            html  
    genesettesting                          html  
    pair.compare                            html  
    pathways                                html  
    phenodata                               html  
    vantVeer                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GlobalAncova' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:186:16: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
             n1 =  ord_perm[j] ;
                ^
GlobalAncova.c: In function 'permut':
GlobalAncova.c:289:16: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
             n1 =  ord_perm[j] ;
                ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ludcmp.c -o ludcmp.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c matrix.c -o matrix.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GlobalAncova' as GlobalAncova_3.48.0.zip
* DONE (GlobalAncova)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GlobalAncova' successfully unpacked and MD5 sums checked
In R CMD INSTALL