Georg Stricker
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/GenoGAM |
| Branch: RELEASE_3_7 |
| Last Commit: 394e735 |
| Last Changed Date: 2018-04-30 10:35:41 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:02 -0400 (Wed, 17 Oct 2018).
| Package 586/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenoGAM 1.8.0 Georg Stricker
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: GenoGAM |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenoGAM_1.8.0.tar.gz && rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenoGAM_1.8.0.zip && rm GenoGAM_1.8.0.tar.gz GenoGAM_1.8.0.zip |
| StartedAt: 2018-10-16 20:37:29 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:38:49 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 80.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenoGAM_1.8.0.tar.gz && rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenoGAM_1.8.0.zip && rm GenoGAM_1.8.0.tar.gz GenoGAM_1.8.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
79 2105k 79 1680k 0 0 18.8M 0 --:--:-- --:--:-- --:--:-- 20.0M
100 2105k 100 2105k 0 0 22.6M 0 --:--:-- --:--:-- --:--:-- 24.1M
install for i386
* installing *source* package 'GenoGAM' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'GenoGAM'
finding HTML links ... done
GenoGAM-class html
GenoGAM-methods html
GenoGAM-view html
GenoGAM html
GenoGAMDataSet-brackets html
GenoGAMDataSet-class html
GenoGAMDataSet html
GenoGAMDataSetToDataFrame html
GenoGAMSettings-class html
GenoGAMSettings html
GenomicTiles-brackets html
GenomicTiles-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpUDhufI/R.INSTALL21c076577b23/GenoGAM/man/GenomicTiles-class.Rd:21: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
GenomicTiles-metrics html
GenomicTiles-view html
GenomicTiles html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpUDhufI/R.INSTALL21c076577b23/GenoGAM/man/GenomicTiles.Rd:25: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
asDataFrame html
callPeaks html
changeSettings html
checkSettings html
computeRegionSignificance html
computeSignificance html
computeSizeFactors html
dataRange html
design html
filterData html
fitGenoGAM html
getChunkIndex html
getCoordinates html
getIndex html
getIndexCoordinates html
getTile html
makeTestGenoGAM html
makeTestGenoGAMDataSet html
makeTestGenomicTiles html
plot.GenoGAM html
qualityCheck html
sizeFactors html
subset-GenoGAM-method html
subset-GenoGAMDataSet-method html
subset-GenomicTiles-method html
subsetByOverlaps-GenoGAM-ANY-method html
subsetByOverlaps-GenoGAMDataSet-GRanges-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpUDhufI/R.INSTALL21c076577b23/GenoGAM/man/subsetByOverlaps-GenoGAMDataSet-GRanges-method.Rd:17: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
subsetByOverlaps-GenomicTiles-GRanges-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpUDhufI/R.INSTALL21c076577b23/GenoGAM/man/subsetByOverlaps-GenomicTiles-GRanges-method.Rd:16: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
tileSettings-elements html
tileSettings html
untile html
writeToBEDFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GenoGAM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenoGAM' as GenoGAM_1.8.0.zip
* DONE (GenoGAM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GenoGAM' successfully unpacked and MD5 sums checked
In R CMD INSTALL