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BUILD BIN report for GENIE3 on tokay2

This page was generated on 2018-10-17 08:44:18 -0400 (Wed, 17 Oct 2018).

Package 584/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENIE3 1.2.1
Van Anh Huynh-Thu
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GENIE3
Branch: RELEASE_3_7
Last Commit: 1b56fe8
Last Changed Date: 2018-05-23 09:25:22 -0400 (Wed, 23 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GENIE3
Version: 1.2.1
Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.2.1.tar.gz
StartedAt: 2018-10-17 06:22:46 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:23:01 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 14.6 seconds
RetCode: 0
Status:  OK  
PackageFile: GENIE3_1.2.1.zip
PackageFileSize: 284.8 KiB

Command output

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###
### Running command:
###
###   rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.2.1.tar.gz
###
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install for i386

* installing *source* package 'GENIE3' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c GENIE3.c -o GENIE3.o
GENIE3.c: In function 'find_the_best_threshold_multiregr':
GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized]
     current_threshold.f=best_threshold;
                        ^
GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
     current_threshold_info=best_info;
                           ^
GENIE3.c: In function 'build_one_tree_ensemble':
GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
       write_one_tree(current_tree, fp);
       ^
GENIE3.c: In function 'find_the_best_threshold_symb_multiregr':
GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
     current_threshold_info=best_info;
                           ^
GENIE3.c: In function 'BuildTreeEns':
GENIE3.c:1753:6: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
   if (flag_continue == 1) {
      ^
GENIE3.c:1725:7: note: 'flag_continue' was declared here
   int flag_continue;
       ^
GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate':
GENIE3.c:1762:3: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
   return flag_continue; 
   ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment"
in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
  converting help for package 'GENIE3'
    finding HTML links ... done
    GENIE3                                  html  
    getLinkList                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GENIE3' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c GENIE3.c -o GENIE3.o
GENIE3.c: In function 'find_the_best_threshold_multiregr':
GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized]
     current_threshold.f=best_threshold;
                        ^
GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
     current_threshold_info=best_info;
                           ^
GENIE3.c: In function 'build_one_tree_ensemble':
GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
       write_one_tree(current_tree, fp);
       ^
GENIE3.c: In function 'find_the_best_threshold_symb_multiregr':
GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
     current_threshold_info=best_info;
                           ^
GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate':
GENIE3.c:1762:3: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
   return flag_continue; 
   ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GENIE3' as GENIE3_1.2.1.zip
* DONE (GENIE3)
In R CMD INSTALL
In R CMD INSTALL