Back to Multiple platform build/check report for BioC 3.7
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

BUILD report for FGNet on tokay2

This page was generated on 2018-10-17 08:37:54 -0400 (Wed, 17 Oct 2018).

Package 487/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FGNet 3.14.0
Sara Aibar
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/FGNet
Branch: RELEASE_3_7
Last Commit: 2ce55ef
Last Changed Date: 2018-04-30 10:35:31 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: FGNet
Version: 3.14.0
Command: chmod a+r FGNet -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data FGNet
StartedAt: 2018-10-16 21:59:13 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 22:00:02 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 49.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r FGNet -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data FGNet
###
##############################################################################
##############################################################################


* checking for file 'FGNet/DESCRIPTION' ... OK
* preparing 'FGNet':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


Quitting from lines 235-237 (FGNet.Rmd) 
Error: processing vignette 'FGNet.Rmd' failed with diagnostics:
Either the web server URL is wrong or the server is down.
Execution halted