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INSTALL report for ExpressionView on tokay2

This page was generated on 2018-10-17 08:34:42 -0400 (Wed, 17 Oct 2018).

Package 473/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExpressionView 1.32.0
Gabor Csardi
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/ExpressionView
Branch: RELEASE_3_7
Last Commit: 02cb530
Last Changed Date: 2018-04-30 10:35:13 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ExpressionView
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ExpressionView_1.32.0.tar.gz && rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ExpressionView_1.32.0.zip && rm ExpressionView_1.32.0.tar.gz ExpressionView_1.32.0.zip
StartedAt: 2018-10-16 19:15:19 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:18:23 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 184.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ExpressionView_1.32.0.tar.gz && rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ExpressionView_1.32.0.zip && rm ExpressionView_1.32.0.tar.gz ExpressionView_1.32.0.zip
###
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100  676k  100  676k    0     0  11.3M      0 --:--:-- --:--:-- --:--:-- 12.9M

install for i386

* installing *source* package 'ExpressionView' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c order.cpp -o order.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c orderclusters.cpp -o orderclusters.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
** help
*** installing help indices
  converting help for package 'ExpressionView'
    finding HTML links ... done
    ExportEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExportEV.Rd:25: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExportEV.Rd:28: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExportEV.Rd:67: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExportEV.Rd:73: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    ExpressionView-package                  html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExpressionView-package.Rd:17: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExpressionView-package.Rd:20: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/ExpressionView-package.Rd:44: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    LaunchEV                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/LaunchEV.Rd:19: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
    OrderEV                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/OrderEV.Rd:20: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpKUzxIR/R.INSTALL1834ac013a8/ExpressionView/man/OrderEV.Rd:61: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'ExpressionView' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c order.cpp -o order.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c orderclusters.cpp -o orderclusters.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ExpressionView' as ExpressionView_1.32.0.zip
* DONE (ExpressionView)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ExpressionView' successfully unpacked and MD5 sums checked
In R CMD INSTALL