Zuguang Gu
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ComplexHeatmap |
| Branch: RELEASE_3_7 |
| Last Commit: be0dd9d |
| Last Changed Date: 2018-06-19 09:49:32 -0400 (Tue, 19 Jun 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:15 -0400 (Wed, 17 Oct 2018).
| Package 296/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ComplexHeatmap 1.18.1 Zuguang Gu
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: ComplexHeatmap |
| Version: 1.18.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ComplexHeatmap_1.18.1.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_1.18.1.zip && rm ComplexHeatmap_1.18.1.tar.gz ComplexHeatmap_1.18.1.zip |
| StartedAt: 2018-10-16 18:47:05 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:49:03 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 117.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ComplexHeatmap_1.18.1.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_1.18.1.zip && rm ComplexHeatmap_1.18.1.tar.gz ComplexHeatmap_1.18.1.zip
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install for i386
* installing *source* package 'ComplexHeatmap' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ComplexHeatmap'
finding HTML links ... done
AdditiveUnit-class html
AdditiveUnit html
ColorMapping-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/ColorMapping-class.rd:21: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
ColorMapping html
ComplexHeatmap-package html
Heatmap-class html
Heatmap html
HeatmapAnnotation-class html
HeatmapAnnotation html
HeatmapList-class html
HeatmapList html
Legend html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/Legend.rd:51: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/Legend.rd:48: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
SingleAnnotation-class html
SingleAnnotation html
add.AdditiveUnit html
add_heatmap-Heatmap-method html
add_heatmap-HeatmapAnnotation-method html
add_heatmap-HeatmapList-method html
add_heatmap-dispatch html
adjust_dend_by_leaf_width html
anno_barplot html
anno_boxplot html
anno_density html
anno_histogram html
anno_link html
anno_oncoprint_barplot html
anno_points html
anno_text html
annotation_legend_size-HeatmapList-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
color_mapping_legend-ColorMapping-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd:60: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
columnAnnotation html
column_anno_barplot html
column_anno_boxplot html
column_anno_density html
column_anno_histogram html
column_anno_link html
column_anno_points html
column_anno_text html
column_dend-Heatmap-method html
column_dend-HeatmapList-method html
column_dend-dispatch html
column_order-Heatmap-method html
column_order-HeatmapList-method html
column_order-dispatch html
component_height-Heatmap-method html
component_height-HeatmapList-method html
component_height-dispatch html
component_width-Heatmap-method html
component_width-HeatmapList-method html
component_width-dispatch html
decorate_annotation html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/decorate_annotation.rd:23: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic
decorate_column_dend html
decorate_column_names html
decorate_column_title html
decorate_dend html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/decorate_dend.rd:25: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic
decorate_dimnames html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/decorate_dimnames.rd:25: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic
decorate_heatmap_body html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/decorate_heatmap_body.rd:23: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic
decorate_row_dend html
decorate_row_names html
decorate_row_title html
decorate_title html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/decorate_title.rd:25: file link 'seekViewport' in package 'grid' does not exist and so has been treated as a topic
densityHeatmap html
dist2 html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/dist2.rd:16: file link 'as.dist' in package 'stats' does not exist and so has been treated as a topic
draw-Heatmap-method html
draw-HeatmapAnnotation-method html
draw-HeatmapList-method html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/draw-HeatmapList-method.rd:43: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/draw-HeatmapList-method.rd:46: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
draw-SingleAnnotation-method html
draw-dispatch html
draw_annotation-Heatmap-method html
draw_annotation_legend-HeatmapList-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
draw_dend-Heatmap-method html
draw_dimnames-Heatmap-method html
draw_heatmap_body-Heatmap-method html
draw_heatmap_legend-HeatmapList-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
draw_heatmap_list-HeatmapList-method html
draw_title-Heatmap-method html
draw_title-HeatmapList-method html
draw_title-dispatch html
enhanced_basicplot html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/enhanced_basicplot.rd:32: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
get_color_mapping_list-HeatmapAnnotation-method
html
get_color_mapping_param_list-HeatmapAnnotation-method
html
grid.dendrogram html
grid.dendrogram2 html
heatmap_legend_size-HeatmapList-method
html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd:16: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
ht_global_opt html
is_abs_unit html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/is_abs_unit.rd:19: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
make_column_cluster-Heatmap-method html
make_layout-Heatmap-method html
make_layout-HeatmapList-method html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:53: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/make_layout-HeatmapList-method.rd:56: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
make_layout-dispatch html
make_row_cluster-Heatmap-method html
map_to_colors-ColorMapping-method html
max_text_height html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/max_text_height.rd:15: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/max_text_height.rd:19: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic
max_text_width html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/max_text_width.rd:15: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/max_text_width.rd:19: file link 'textGrob' in package 'grid' does not exist and so has been treated as a topic
oncoPrint html
packLegend html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpiCQriW/R.INSTALL4f03dcd2995/ComplexHeatmap/man/packLegend.rd:20: file link 'grob' in package 'grid' does not exist and so has been treated as a topic
plotDataFrame html
prepare-Heatmap-method html
rowAnnotation html
row_anno_barplot html
row_anno_boxplot html
row_anno_density html
row_anno_histogram html
row_anno_link html
row_anno_points html
row_anno_text html
row_dend-Heatmap-method html
row_dend-HeatmapList-method html
row_dend-dispatch html
row_order-Heatmap-method html
row_order-HeatmapList-method html
row_order-dispatch html
selectArea html
set_component_height-Heatmap-method html
show-ColorMapping-method html
show-Heatmap-method html
show-HeatmapAnnotation-method html
show-HeatmapList-method html
show-SingleAnnotation-method html
show-dispatch html
unify_mat_list html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ComplexHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ComplexHeatmap' as ComplexHeatmap_1.18.1.zip
* DONE (ComplexHeatmap)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ComplexHeatmap' successfully unpacked and MD5 sums checked
In R CMD INSTALL