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CHECK report for MSstatsBioData on malbec1

This page was generated on 2018-04-12 12:50:23 -0400 (Thu, 12 Apr 2018).

Package 207/326HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsBioData 1.0.0
Meena Choi
Snapshot Date: 2018-04-12 07:35:06 -0400 (Thu, 12 Apr 2018)
URL: https://git.bioconductor.org/packages/MSstatsBioData
Branch: RELEASE_3_6
Last Commit: 26969ff
Last Changed Date: 2017-10-30 11:58:35 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: MSstatsBioData
Version: 1.0.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MSstatsBioData_1.0.0.tar.gz
StartedAt: 2018-04-12 10:17:59 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 10:21:55 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 235.9 seconds
RetCode: 0
Status:  OK 
CheckDir: MSstatsBioData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MSstatsBioData_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/MSstatsBioData.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MSstatsBioData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MSstatsBioData’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MSstatsBioData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   5.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
DDA_cardio         24.200  0.356  45.543
SRM_crc_training    7.060  0.220  30.183
SRM_crc_validation  5.676  0.228  73.082
SRM_mpm_training    3.640  0.164  16.314
SRM_yeast           3.408  0.152  11.823
SRM_mpm_validation  3.184  0.168  15.121
SRM_ovarian         1.896  0.120  11.440
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/MSstatsBioData.Rcheck/00check.log’
for details.



Installation output

MSstatsBioData.Rcheck/00install.out

* installing *source* package ‘MSstatsBioData’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MSstatsBioData)

Tests output


Example timings

MSstatsBioData.Rcheck/MSstatsBioData-Ex.timings

nameusersystemelapsed
DDA_cardio24.200 0.35645.543
SRM_crc_training 7.060 0.22030.183
SRM_crc_validation 5.676 0.22873.082
SRM_mpm_training 3.640 0.16416.314
SRM_mpm_validation 3.184 0.16815.121
SRM_ovarian 1.896 0.12011.440
SRM_yeast 3.408 0.15211.823