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CHECK report for gageData on malbec1

This page was generated on 2018-04-12 12:49:12 -0400 (Thu, 12 Apr 2018).

Package 114/326HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gageData 2.16.0
Weijun Luo
Snapshot Date: 2018-04-12 07:35:06 -0400 (Thu, 12 Apr 2018)
URL: https://git.bioconductor.org/packages/gageData
Branch: RELEASE_3_6
Last Commit: 72604de
Last Changed Date: 2017-10-30 11:58:23 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: gageData
Version: 2.16.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings gageData_2.16.0.tar.gz
StartedAt: 2018-04-12 10:02:05 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 10:02:41 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 36.0 seconds
RetCode: 0
Status:  OK 
CheckDir: gageData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings gageData_2.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/gageData.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘2.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gageData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.8Mb
  sub-directories of 1Mb or more:
    data  10.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
hnrnp.cnts 8.792  0.044    8.84
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/gageData.Rcheck/00check.log’
for details.



Installation output

gageData.Rcheck/00install.out

* installing *source* package ‘gageData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (gageData)

Tests output


Example timings

gageData.Rcheck/gageData-Ex.timings

nameusersystemelapsed
bmp62.7720.0562.837
genesets2.8960.0202.932
gse16873.full1.4960.0241.520
hnrnp.cnts8.7920.0448.840
sc.gene0.0200.0040.026