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CHECK report for supraHex on malbec1

This page was generated on 2018-04-12 13:11:27 -0400 (Thu, 12 Apr 2018).

Package 1367/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.16.0
Hai Fang
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/supraHex
Branch: RELEASE_3_6
Last Commit: 63b23c3
Last Changed Date: 2017-10-30 12:40:07 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: supraHex
Version: 1.16.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.16.0.tar.gz
StartedAt: 2018-04-12 03:13:14 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 03:13:58 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 43.9 seconds
RetCode: 0
Status:  OK 
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.16.0.tar.gz
###
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##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/supraHex.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.2960.0000.298
sCompReorder1.0600.0001.062
sDistance0.0600.0040.065
sDmat0.0840.0000.084
sDmatCluster0.1760.0040.178
sDmatMinima0.1000.0040.103
sHexDist0.0040.0000.004
sHexGrid0.0040.0000.002
sHexGridVariant0.0040.0000.004
sHexPolygon0.0000.0000.002
sInitial0.0000.0000.002
sMapOverlay0.3320.0000.331
sNeighAny0.0000.0040.005
sNeighDirect0.0000.0000.003
sPipeline1.2080.0041.214
sTopology0.0120.0040.014
sTrainBatch0.0320.0000.030
sTrainSeq0.2520.0000.253
sTrainology0.0000.0040.003
sWriteData0.2240.0000.222
visColoralpha0.0040.0000.005
visColorbar0.0360.0000.035
visColormap0.0080.0000.007
visCompReorder1.0880.0001.090
visDmatCluster0.2120.0080.217
visDmatHeatmap0.1440.0000.144
visHeatmap0.0760.0000.076
visHeatmapAdv0.8360.0000.833
visHexAnimate0.0000.0000.002
visHexBarplot0.5560.0080.565
visHexComp0.0760.0080.086
visHexGrid0.0800.0000.078
visHexMapping1.0920.0081.100
visHexMulComp0.7160.0080.724
visHexPattern1.5080.0201.528
visKernels0.0080.0000.009
visTreeBSclust0.7440.0040.746
visTreeBootstrap0.6440.0000.645
visVp0.020.000.02