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BUILD report for paxtoolsr on malbec1

This page was generated on 2018-04-12 13:12:50 -0400 (Thu, 12 Apr 2018).

Package 1011/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.12.0
Augustin Luna
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/paxtoolsr
Branch: RELEASE_3_6
Last Commit: 4bf56d9
Last Changed Date: 2017-10-30 12:40:41 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: paxtoolsr
Version: 1.12.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
StartedAt: 2018-04-11 19:41:49 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 19:41:58 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 9.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
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* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* preparing ‘paxtoolsr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: rJava
Loading required package: XML
2018-04-11 19:41:56,732 893  [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2018-04-11 19:41:56,842 1003 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)
Quitting from lines 170-172 (using_paxtoolsr.Rmd) 
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
Failed to connect to www.pathwaycommons.org port 80: Connection refused
Execution halted