Matthias Döring
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/openPrimeR |
| Branch: RELEASE_3_6 |
| Last Commit: 0e8c82d |
| Last Changed Date: 2018-03-22 10:14:11 -0400 (Thu, 22 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:28 -0400 (Thu, 12 Apr 2018).
| Package 977/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| openPrimeR 1.0.4 Matthias Döring
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: openPrimeR |
| Version: 1.0.4 |
| Command: cd openPrimeR.buildbin-libdir/openPrimeR && zip -r ../../openPrimeR_1.0.4.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:55:17 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:55:49 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 31.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: openPrimeR_1.0.4.zip |
| PackageFileSize: 4.214 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd openPrimeR.buildbin-libdir/openPrimeR && zip -r ../../openPrimeR_1.0.4.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: data/ (372 bytes security) (stored 0%) adding: data/Comparison.rda (332 bytes security) (deflated 0%) adding: data/Ippolito.rda (332 bytes security) (stored 0%) adding: data/RefCoverage.rda (332 bytes security) (stored 0%) adding: data/Tiller.rda (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 54%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 60%) adding: doc/openPrimeR_vignette.html (332 bytes security) (deflated 60%) adding: doc/openPrimeR_vignette.R (332 bytes security) (deflated 75%) adding: doc/openPrimeR_vignette.Rmd (332 bytes security) (deflated 70%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/primer_sets/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Brezinschek1995_1st.csv (332 bytes security) (deflated 90%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Brezinschek1995_2nd.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Cardona1995.csv (332 bytes security) (deflated 83%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Chong2002.csv (332 bytes security) (deflated 81%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Glamann1998.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Glas1999.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Ippolito2012.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Kueppers1993.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Lim2010.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Manheimer1991.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Marks1991.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Murugan2015_1st.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Murugan2015_2nd.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_openPrimeR2017.csv (332 bytes security) (deflated 91%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Persson1991.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Rubinstein1998.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Sblattero1998.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Scheid2011.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Szczepa2001.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Tiller2008_1st.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Tiller2008_2nd.csv (332 bytes security) (deflated 97%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_A.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_B.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_C.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanDongen2003_single.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanEs1991.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_vanEs1991_CDR.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Verhagen2000.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Wardemann2003.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Weng1992.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGH/IGH_Wu2010.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGH_templates.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Atkinson1996.csv (332 bytes security) (deflated 82%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Beishuizen1997.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Cardona1995.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Chen1986.csv (332 bytes security) (deflated 88%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Chen1987.csv (332 bytes security) (deflated 90%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Cox1994.csv (332 bytes security) (deflated 84%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Giachino1995.csv (332 bytes security) (deflated 83%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Glamann1998.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Huber1993.csv (332 bytes security) (deflated 88%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Ippolito2012.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Juul1997.csv (332 bytes security) (deflated 88%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Kueppers1993.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Lim2010.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Manheimer1991.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Marks1991.csv (332 bytes security) (deflated 96%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Murugan2015_1st.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Murugan2015_2nd.csv (332 bytes security) (deflated 91%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_openPrimeR2017.csv (332 bytes security) (deflated 90%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Padyukov2001.csv (332 bytes security) (deflated 82%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Persson1991.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Pongers1999.csv (332 bytes security) (deflated 94%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Rubinstein1998.csv (332 bytes security) (deflated 91%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Sblattero1998.csv (332 bytes security) (deflated 95%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Tiller2008.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Timmers1993.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_vanBurg2001.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_vanDongen2003.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_vanEs1991.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGK/IGK_Wardemann2003.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGK_templates.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Cardona1995.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Farner1999_1st.csv (332 bytes security) (deflated 86%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Farner1999_2nd.csv (332 bytes security) (deflated 91%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Ippolito2012.csv (332 bytes security) (deflated 91%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Lim2010.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Marks1991.csv (332 bytes security) (deflated 90%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Moraes2003.csv (332 bytes security) (deflated 82%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Murugan2015_1st.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Murugan2015_2nd.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_openPrimeR2017.csv (332 bytes security) (deflated 84%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Rubinstein1998.csv (332 bytes security) (deflated 86%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Sblattero1998.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Stiernholm1994.csv (332 bytes security) (deflated 86%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Tiller2008.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_vanBurg2001.csv (332 bytes security) (deflated 88%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_vanDongen2003.csv (332 bytes security) (deflated 89%) adding: extdata/IMGT_data/comparison/primer_sets/IGL/IGL_Wardemann2003.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/primer_sets/IGL_templates.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/comparison/templates/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/comparison/templates/IGH_templates.csv (332 bytes security) (deflated 93%) adding: extdata/IMGT_data/comparison/templates/IGK_templates.csv (332 bytes security) (deflated 92%) adding: extdata/IMGT_data/comparison/templates/IGL_templates.csv (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/primers/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGHV/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGHV/Brezinschek1995_1st.fasta (332 bytes security) (deflated 56%) adding: extdata/IMGT_data/primers/IGHV/Brezinschek1995_2nd.fasta (332 bytes security) (deflated 56%) adding: extdata/IMGT_data/primers/IGHV/Cardona1995.fasta (332 bytes security) (deflated 53%) adding: extdata/IMGT_data/primers/IGHV/Chong2002.fasta (332 bytes security) (deflated 4%) adding: extdata/IMGT_data/primers/IGHV/Glamann1998.fasta (332 bytes security) (deflated 69%) adding: extdata/IMGT_data/primers/IGHV/Glas1999.fasta (332 bytes security) (deflated 75%) adding: extdata/IMGT_data/primers/IGHV/Ippolito2012.fasta (332 bytes security) (deflated 58%) adding: extdata/IMGT_data/primers/IGHV/Kueppers1993.fasta (332 bytes security) (deflated 53%) adding: extdata/IMGT_data/primers/IGHV/Lim2010.fasta (332 bytes security) (deflated 55%) adding: extdata/IMGT_data/primers/IGHV/Manheimer1991.fasta (332 bytes security) (deflated 50%) adding: extdata/IMGT_data/primers/IGHV/Marks1991.fasta (332 bytes security) (deflated 59%) adding: extdata/IMGT_data/primers/IGHV/Murugan2015_1st.fasta (332 bytes security) (deflated 56%) adding: extdata/IMGT_data/primers/IGHV/Murugan2015_2nd.fasta (332 bytes security) (deflated 2%) adding: extdata/IMGT_data/primers/IGHV/openPrimeR2017.fasta (332 bytes security) (deflated 64%) adding: extdata/IMGT_data/primers/IGHV/Persson1991.fasta (332 bytes security) (deflated 59%) adding: extdata/IMGT_data/primers/IGHV/Rubinstein1998.fasta (332 bytes security) (deflated 65%) adding: extdata/IMGT_data/primers/IGHV/Sblattero1998.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/IGHV/Scheid2011.fasta (332 bytes security) (deflated 74%) adding: extdata/IMGT_data/primers/IGHV/Szczepa2001.fasta (332 bytes security) (deflated 53%) adding: extdata/IMGT_data/primers/IGHV/Tiller2008_1st.fasta (332 bytes security) (deflated 51%) adding: extdata/IMGT_data/primers/IGHV/Tiller2008_2nd.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/IGHV/vanDongen2003_A.fasta (332 bytes security) (deflated 54%) adding: extdata/IMGT_data/primers/IGHV/vanDongen2003_B.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/IGHV/vanDongen2003_C.fasta (332 bytes security) (deflated 55%) adding: extdata/IMGT_data/primers/IGHV/vanDongen2003_single.fasta (332 bytes security) (deflated 5%) adding: extdata/IMGT_data/primers/IGHV/vanEs1991.fasta (332 bytes security) (deflated 46%) adding: extdata/IMGT_data/primers/IGHV/vanEs1991_CDR.fasta (332 bytes security) (deflated 40%) adding: extdata/IMGT_data/primers/IGHV/Verhagen2000.fasta (332 bytes security) (deflated 58%) adding: extdata/IMGT_data/primers/IGHV/Wardemann2003.fasta (332 bytes security) (deflated 52%) adding: extdata/IMGT_data/primers/IGHV/Weng1992.fasta (332 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGHV/Wu2010.fasta (332 bytes security) (deflated 52%) adding: extdata/IMGT_data/primers/IGKV/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGKV/Atkinson1996.fasta (332 bytes security) (deflated 38%) adding: extdata/IMGT_data/primers/IGKV/Beishuizen1997.fasta (332 bytes security) (deflated 38%) adding: extdata/IMGT_data/primers/IGKV/Cardona1995.fasta (332 bytes security) (deflated 47%) adding: extdata/IMGT_data/primers/IGKV/Chen1986.fasta (332 bytes security) (deflated 2%) adding: extdata/IMGT_data/primers/IGKV/Chen1987.fasta (332 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGKV/Cox1994.fasta (332 bytes security) (deflated 50%) adding: extdata/IMGT_data/primers/IGKV/Giachino1995.fasta (332 bytes security) (deflated 25%) adding: extdata/IMGT_data/primers/IGKV/Glamann1998.fasta (332 bytes security) (deflated 59%) adding: extdata/IMGT_data/primers/IGKV/Huber1993.fasta (332 bytes security) (deflated 39%) adding: extdata/IMGT_data/primers/IGKV/Ippolito2012.fasta (332 bytes security) (deflated 46%) adding: extdata/IMGT_data/primers/IGKV/Juul1997.fasta (332 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGKV/Kueppers1993.fasta (332 bytes security) (deflated 51%) adding: extdata/IMGT_data/primers/IGKV/Lim2010.fasta (332 bytes security) (deflated 49%) adding: extdata/IMGT_data/primers/IGKV/Manheimer1991.fasta (332 bytes security) (deflated 43%) adding: extdata/IMGT_data/primers/IGKV/Marks1991.fasta (332 bytes security) (deflated 59%) adding: extdata/IMGT_data/primers/IGKV/Murugan2015_1st.fasta (332 bytes security) (deflated 40%) adding: extdata/IMGT_data/primers/IGKV/Murugan2015_2nd.fasta (332 bytes security) (deflated 2%) adding: extdata/IMGT_data/primers/IGKV/openPrimeR2017.fasta (332 bytes security) (deflated 50%) adding: extdata/IMGT_data/primers/IGKV/Padyukov2001.fasta (332 bytes security) (deflated 28%) adding: extdata/IMGT_data/primers/IGKV/Persson1991.fasta (332 bytes security) (deflated 30%) adding: extdata/IMGT_data/primers/IGKV/Pongers1999.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/IGKV/Rubinstein1998.fasta (332 bytes security) (deflated 54%) adding: extdata/IMGT_data/primers/IGKV/Sblattero1998.fasta (332 bytes security) (deflated 48%) adding: extdata/IMGT_data/primers/IGKV/Tiller2008.fasta (332 bytes security) (deflated 39%) adding: extdata/IMGT_data/primers/IGKV/Timmers1993.fasta (332 bytes security) (deflated 52%) adding: extdata/IMGT_data/primers/IGKV/vanBurg2001.fasta (332 bytes security) (deflated 59%) adding: extdata/IMGT_data/primers/IGKV/vanDongen2003.fasta (332 bytes security) (deflated 54%) adding: extdata/IMGT_data/primers/IGKV/vanEs1991.fasta (332 bytes security) (deflated 40%) adding: extdata/IMGT_data/primers/IGKV/Wardemann2003.fasta (332 bytes security) (deflated 41%) adding: extdata/IMGT_data/primers/IGLV/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/IGLV/Cardona1995.fasta (332 bytes security) (deflated 2%) adding: extdata/IMGT_data/primers/IGLV/Farner1999_1st.fasta (332 bytes security) (deflated 57%) adding: extdata/IMGT_data/primers/IGLV/Farner1999_2nd.fasta (332 bytes security) (deflated 63%) adding: extdata/IMGT_data/primers/IGLV/Ippolito2012.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/IGLV/Lim2010.fasta (332 bytes security) (deflated 55%) adding: extdata/IMGT_data/primers/IGLV/Marks1991.fasta (332 bytes security) (deflated 56%) adding: extdata/IMGT_data/primers/IGLV/Moraes2003.fasta (332 bytes security) (deflated 32%) adding: extdata/IMGT_data/primers/IGLV/Murugan2015_1st.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/IGLV/Murugan2015_2nd.fasta (332 bytes security) (deflated 26%) adding: extdata/IMGT_data/primers/IGLV/openPrimeR2017.fasta (332 bytes security) (deflated 52%) adding: extdata/IMGT_data/primers/IGLV/Rubinstein1998.fasta (332 bytes security) (deflated 2%) adding: extdata/IMGT_data/primers/IGLV/Sblattero1998.fasta (332 bytes security) (deflated 62%) adding: extdata/IMGT_data/primers/IGLV/Stiernholm1994.fasta (332 bytes security) (deflated 47%) adding: extdata/IMGT_data/primers/IGLV/Tiller2008.fasta (332 bytes security) (deflated 59%) adding: extdata/IMGT_data/primers/IGLV/vanBurg2001.fasta (332 bytes security) (deflated 55%) adding: extdata/IMGT_data/primers/IGLV/vanDongen2003.fasta (332 bytes security) (deflated 32%) adding: extdata/IMGT_data/primers/IGLV/Wardemann2003.fasta (332 bytes security) (deflated 60%) adding: extdata/IMGT_data/primers/Test/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/primers/Test/test_both.fasta (332 bytes security) (deflated 44%) adding: extdata/IMGT_data/templates/ (372 bytes security) (stored 0%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGH_any_exon.fasta (332 bytes security) (deflated 88%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGH_any_leader.fasta (332 bytes security) (deflated 86%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_exon.fasta (332 bytes security) (deflated 90%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_exon_exp.fasta (332 bytes security) (deflated 90%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_leader.fasta (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGH_functional_leader_exp.fasta (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGK_any_exon.fasta (332 bytes security) (deflated 87%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGK_any_leader.fasta (332 bytes security) (deflated 84%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGK_functional_exon.fasta (332 bytes security) (deflated 88%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGK_functional_leader.fasta (332 bytes security) (deflated 85%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGL_any_exon.fasta (332 bytes security) (deflated 79%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGL_any_leader.fasta (332 bytes security) (deflated 79%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGL_functional_exon.fasta (332 bytes security) (deflated 79%) adding: extdata/IMGT_data/templates/Homo_sapiens_IGL_functional_leader.fasta (332 bytes security) (deflated 78%) adding: extdata/report/ (372 bytes security) (stored 0%) adding: extdata/report/disclaimer.Rmd (332 bytes security) (deflated 42%) adding: extdata/report/header.tex (332 bytes security) (deflated 49%) adding: extdata/report/logo_text.png (332 bytes security) (deflated 2%) adding: extdata/report/parameters.Rmd (332 bytes security) (deflated 66%) adding: extdata/report/report.Rmd (332 bytes security) (deflated 65%) adding: extdata/report/report_comparison.Rmd (332 bytes security) (deflated 68%) adding: extdata/settings/ (372 bytes security) (stored 0%) adding: extdata/settings/A_Taq_PCR_design.xml (332 bytes security) (deflated 85%) adding: extdata/settings/B_Taq_PCR_evaluate.xml (332 bytes security) (deflated 85%) adding: extdata/settings/C_Taq_PCR_high_stringency.xml (332 bytes security) (deflated 85%) adding: extdata/settings/settings_schema.xsd (332 bytes security) (deflated 71%) adding: extdata/Vir/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/comparison/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/comparison/primers/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/comparison/primers/Wei2004.csv (332 bytes security) (deflated 93%) adding: extdata/Vir/HIV-1/gag/comparison/templates/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/comparison/templates/HIV1_REF_2010_gag_DNA.csv (332 bytes security) (deflated 89%) adding: extdata/Vir/HIV-1/gag/primers/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/primers/Wei2004.fasta (332 bytes security) (deflated 48%) adding: extdata/Vir/HIV-1/gag/templates/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/gag/templates/HIV1_REF_2010_gag_DNA.fasta (332 bytes security) (deflated 87%) adding: extdata/Vir/HIV-1/pol/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/pol/comparison/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/pol/comparison/primers/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/pol/comparison/primers/Dudley_2014.csv (332 bytes security) (deflated 92%) adding: extdata/Vir/HIV-1/pol/comparison/primers/Nie2011.csv (332 bytes security) (deflated 96%) adding: extdata/Vir/HIV-1/pol/comparison/templates/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/pol/comparison/templates/pol.csv (332 bytes security) (deflated 91%) adding: extdata/Vir/HIV-1/pol/primers/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/pol/primers/Dudley2014.fasta (332 bytes security) (deflated 16%) adding: extdata/Vir/HIV-1/pol/primers/Nie2011.fasta (332 bytes security) (deflated 49%) adding: extdata/Vir/HIV-1/pol/templates/ (372 bytes security) (stored 0%) adding: extdata/Vir/HIV-1/pol/templates/HIV1_REF_2010_pol_DNA.fasta (332 bytes security) (deflated 87%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 80%) adding: help/openPrimeR.rdb (332 bytes security) (deflated 1%) adding: help/openPrimeR.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 88%) adding: html/AnalysisStats.html (332 bytes security) (deflated 70%) adding: html/check_cvg_constraints.html (332 bytes security) (deflated 61%) adding: html/create_report-list-list-method.html (332 bytes security) (deflated 57%) adding: html/create_report-Primers-Templates-method.html (332 bytes security) (deflated 59%) adding: html/Data.html (332 bytes security) (deflated 59%) adding: html/filterLimits-methods.html (332 bytes security) (deflated 49%) adding: html/filters-methods.html (332 bytes security) (deflated 48%) adding: html/get_cvg_stats-list-method.html (332 bytes security) (deflated 59%) adding: html/get_cvg_stats-Primers-method.html (332 bytes security) (deflated 59%) adding: html/Input.html (332 bytes security) (deflated 73%) adding: html/openPrimeR-package.html (332 bytes security) (deflated 62%) adding: html/Output.html (332 bytes security) (deflated 67%) adding: html/Plots.html (332 bytes security) (deflated 75%) adding: html/plot_constraint-list-method.html (332 bytes security) (deflated 57%) adding: html/plot_constraint-Primers-method.html (332 bytes security) (deflated 55%) adding: html/plot_constraint_deviation-list-method.html (332 bytes security) (deflated 55%) adding: html/plot_constraint_deviation-Primers-method.html (332 bytes security) (deflated 54%) adding: html/plot_constraint_fulfillment-list-method.html (332 bytes security) (deflated 57%) adding: html/plot_constraint_fulfillment-Primers-method.html (332 bytes security) (deflated 54%) adding: html/plot_cvg_constraints-list-method.html (332 bytes security) (deflated 57%) adding: html/plot_cvg_constraints-Primers-method.html (332 bytes security) (deflated 54%) adding: html/plot_primer_binding_regions-list-list-method.html (332 bytes security) (deflated 60%) adding: html/plot_primer_binding_regions-Primers-Templates-method.html (332 bytes security) (deflated 58%) adding: html/plot_primer_cvg-list-list-method.html (332 bytes security) (deflated 53%) adding: html/plot_primer_cvg-Primers-Templates-method.html (332 bytes security) (deflated 56%) adding: html/plot_template_cvg-list-list-method.html (332 bytes security) (deflated 55%) adding: html/plot_template_cvg-Primers-Templates-method.html (332 bytes security) (deflated 55%) adding: html/PrimerDesign.html (332 bytes security) (deflated 70%) adding: html/PrimerEval.html (332 bytes security) (deflated 69%) adding: html/Primers-method.html (332 bytes security) (deflated 65%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/runTutorial.html (332 bytes security) (deflated 49%) adding: html/Scoring.html (332 bytes security) (deflated 64%) adding: html/Settings.html (332 bytes security) (deflated 76%) adding: html/Templates-method.html (332 bytes security) (deflated 66%) adding: html/TemplatesFunctions.html (332 bytes security) (deflated 70%) adding: INDEX (332 bytes security) (deflated 64%) adding: MD5 (332 bytes security) (deflated 66%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 73%) adding: NEWS (332 bytes security) (deflated 55%) adding: R/ (372 bytes security) (stored 0%) adding: R/openPrimeR (332 bytes security) (deflated 41%) adding: R/openPrimeR.rdb (332 bytes security) (deflated 16%) adding: R/openPrimeR.rdx (332 bytes security) (deflated 0%) adding: R/sysdata.rdb (332 bytes security) (deflated 21%) adding: R/sysdata.rdx (332 bytes security) (stored 0%) adding: tutorials/ (372 bytes security) (stored 0%) adding: tutorials/introduction/ (372 bytes security) (stored 0%) adding: tutorials/introduction/compare_primers.Rmd (332 bytes security) (deflated 71%) adding: tutorials/introduction/designing_primers.Rmd (332 bytes security) (deflated 75%) adding: tutorials/introduction/evaluate_constraints.Rmd (332 bytes security) (deflated 77%) adding: tutorials/introduction/introduction.html (332 bytes security) (deflated 91%) adding: tutorials/introduction/introduction.Rmd (332 bytes security) (deflated 53%) adding: tutorials/introduction/loading_primers.Rmd (332 bytes security) (deflated 62%) adding: tutorials/introduction/loading_settings.Rmd (332 bytes security) (deflated 71%) adding: tutorials/introduction/loading_templates.Rmd (332 bytes security) (deflated 74%) adding: tutorials/introduction/preliminaries.Rmd (332 bytes security) (deflated 37%) adding: tutorials/introduction/primer_coverage.Rmd (332 bytes security) (deflated 76%)