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INSTALL report for mzID on tokay1

This page was generated on 2018-04-12 13:23:16 -0400 (Thu, 12 Apr 2018).

Package 924/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mzID 1.16.0
Thomas Lin Pedersen
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/mzID
Branch: RELEASE_3_6
Last Commit: fc20383
Last Changed Date: 2017-10-30 12:40:07 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mzID
Version: 1.16.0
Command: rm -rf mzID.buildbin-libdir && mkdir mzID.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/mzID_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=mzID.buildbin-libdir --merge-multiarch mzID_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL mzID_1.16.0.zip && rm mzID_1.16.0.tar.gz mzID_1.16.0.zip
StartedAt: 2018-04-11 18:12:31 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:13:41 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 70.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf mzID.buildbin-libdir && mkdir mzID.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/mzID_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=mzID.buildbin-libdir --merge-multiarch mzID_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL mzID_1.16.0.zip  && rm mzID_1.16.0.tar.gz mzID_1.16.0.zip
###
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install for i386

* installing *source* package 'mzID' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'mzID'
    finding HTML links ... done
    flatten                                 html  
    increment                               html  
    keyFor                                  html  
    mzID-class                              html  
    mzID-getters                            html  
    mzID-package                            html  
    mzID                                    html  
    mzIDCollection-class                    html  
    mzIDCollection                          html  
    mzIDdatabase-class                      html  
    mzIDdatabase                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpw7Li9H/R.INSTALL10642d8b104f/mzID/man/mzIDdatabase.Rd:11: missing file link 'xmlInternalTreeParse'
    mzIDevidence-class                      html  
    mzIDevidence                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpw7Li9H/R.INSTALL10642d8b104f/mzID/man/mzIDevidence.Rd:11: missing file link 'xmlInternalTreeParse'
    mzIDparameters-class                    html  
    mzIDparameters                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpw7Li9H/R.INSTALL10642d8b104f/mzID/man/mzIDparameters.Rd:11: missing file link 'xmlInternalTreeParse'
    mzIDpeptides-class                      html  
    mzIDpeptides                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpw7Li9H/R.INSTALL10642d8b104f/mzID/man/mzIDpeptides.Rd:11: missing file link 'xmlInternalTreeParse'
    mzIDpsm-class                           html  
    mzIDpsm                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpw7Li9H/R.INSTALL10642d8b104f/mzID/man/mzIDpsm.Rd:11: missing file link 'xmlInternalTreeParse'
    removeDecoy                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'mzID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mzID' as mzID_1.16.0.zip
* DONE (mzID)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'mzID' successfully unpacked and MD5 sums checked
In R CMD INSTALL