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INSTALL report for methylumi on tokay1

This page was generated on 2018-04-12 13:19:42 -0400 (Thu, 12 Apr 2018).

Package 844/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylumi 2.24.1
Sean Davis
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/methylumi
Branch: RELEASE_3_6
Last Commit: 1e0e314
Last Changed Date: 2017-11-01 10:17:11 -0400 (Wed, 01 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: methylumi
Version: 2.24.1
Command: rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/methylumi_2.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=methylumi.buildbin-libdir --merge-multiarch methylumi_2.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL methylumi_2.24.1.zip && rm methylumi_2.24.1.tar.gz methylumi_2.24.1.zip
StartedAt: 2018-04-11 18:51:55 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:53:09 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 73.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/methylumi_2.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=methylumi.buildbin-libdir --merge-multiarch methylumi_2.24.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL methylumi_2.24.1.zip  && rm methylumi_2.24.1.tar.gz methylumi_2.24.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 25 5611k   25 1408k    0     0  28.0M      0 --:--:-- --:--:-- --:--:-- 29.2M
100 5611k  100 5611k    0     0  46.2M      0 --:--:-- --:--:-- --:--:-- 47.2M

install for i386

* installing *source* package 'methylumi' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'methylumi'
    finding HTML links ... done
    CpGs                                    html  
    MethyLumi-class                         html  
    finding level-2 HTML links ... done

    MethyLumiM-class                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:41: missing file link 'ExpressionSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:41: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:53: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:54: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:55: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:56: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:57: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:58: missing file link 'eSet-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpK03ySu/R.INSTALL149870a771d6/methylumi/man/MethyLumiM-class.Rd:70: missing file link 'eSet-class'
    MethyLumiQC-class                       html  
    MethyLumiSet-class                      html  
    estimateM                               html  
    extractBarcodeAndPosition               html  
    featureFilter                           html  
    generics                                html  
    getAssayDataNameSubstitutions           html  
    methylData-class                        html  
    methylumIDAT                            html  
    methylumi-package                       html  
    methylumiGenerics                       html  
    methylumiR                              html  
    mldat                                   html  
    normalizeMethyLumiSet                   html  
    plotSampleIntensities                   html  
    qcplot                                  html  
    stripBeadExtras                         html  
    varFilter                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'methylumi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylumi' as methylumi_2.24.1.zip
* DONE (methylumi)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'methylumi' successfully unpacked and MD5 sums checked
In R CMD INSTALL