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CHECK report for immunoClust on tokay1

This page was generated on 2018-04-12 13:25:51 -0400 (Thu, 12 Apr 2018).

Package 691/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
immunoClust 1.10.0
Till Soerensen
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/immunoClust
Branch: RELEASE_3_6
Last Commit: 2f4ae9d
Last Changed Date: 2017-10-30 12:40:49 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: immunoClust
Version: 1.10.0
Command: rm -rf immunoClust.buildbin-libdir immunoClust.Rcheck && mkdir immunoClust.buildbin-libdir immunoClust.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=immunoClust.buildbin-libdir immunoClust_1.10.0.tar.gz >immunoClust.Rcheck\00install.out 2>&1 && cp immunoClust.Rcheck\00install.out immunoClust-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=immunoClust.buildbin-libdir --install="check:immunoClust-install.out" --force-multiarch --no-vignettes --timings immunoClust_1.10.0.tar.gz
StartedAt: 2018-04-12 00:50:09 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 00:57:05 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 416.2 seconds
RetCode: 0
Status:  OK  
CheckDir: immunoClust.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf immunoClust.buildbin-libdir immunoClust.Rcheck && mkdir immunoClust.buildbin-libdir immunoClust.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=immunoClust.buildbin-libdir immunoClust_1.10.0.tar.gz >immunoClust.Rcheck\00install.out 2>&1 && cp immunoClust.Rcheck\00install.out immunoClust-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=immunoClust.buildbin-libdir --install="check:immunoClust-install.out" --force-multiarch --no-vignettes --timings immunoClust_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/immunoClust.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'immunoClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'immunoClust' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'immunoClust' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.3Mb
  sub-directories of 1Mb or more:
    doc    2.8Mb
    libs   1.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.6-bioc/meat/immunoClust.buildbin-libdir/immunoClust/libs/i386/immunoClust.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
dat.fcs            62.64   0.17   62.83
cell.process       62.59   0.12   62.72
cell.SubClustering 14.97   0.04   15.00
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
dat.fcs            63.81   0.08   63.89
cell.process       58.64   0.06   58.72
cell.SubClustering 16.69   0.08   16.76
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/immunoClust.Rcheck/00check.log'
for details.



Installation output

immunoClust.Rcheck/00install.out


install for i386

* installing *source* package 'immunoClust' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c R_meta.cpp -o R_meta.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c R_model.cpp -o R_model.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c dist_mvn.cpp -o dist_mvn.o
dist_mvn.cpp: In member function 'int dist_mvn::hellinger(double*)':
dist_mvn.cpp:56:14: warning: variable 'det_k' set but not used [-Wunused-but-set-variable]
  double det, det_k, det_l, logD;
              ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c em_meta.cpp -o em_meta.o
em_meta.cpp: In member function 'double em_meta::bt_step()':
em_meta.cpp:438:10: warning: variable 'sndLike' set but not used [-Wunused-but-set-variable]
   double sndLike = 0.0;
          ^
em_meta.cpp: In member function 'int em_meta::wt_step()':
em_meta.cpp:539:9: warning: variable 'minNk' set but not used [-Wunused-but-set-variable]
  double minNk = T_sum;
         ^
em_meta.cpp:541:9: warning: variable 'minDelta' set but not used [-Wunused-but-set-variable]
  double minDelta = FLTMAX;
         ^
em_meta.cpp: In member function 'int em_meta::st_step()':
em_meta.cpp:609:9: warning: variable 'minNk' set but not used [-Wunused-but-set-variable]
  double minNk = T_sum;
         ^
em_meta.cpp:611:9: warning: variable 'minDelta' set but not used [-Wunused-but-set-variable]
  double minDelta = FLTMAX;
         ^
em_meta.cpp: In member function 'int em_meta::final(int*, double*, int*)':
em_meta.cpp:1118:10: warning: variable 'maxLike' set but not used [-Wunused-but-set-variable]
   double maxLike = 0;
          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c em_mvn.cpp -o em_mvn.o
em_mvn.cpp: In member function 'int em_gaussian::build(const int*, double*, int*)':
em_mvn.cpp:595:18: warning: unused variable 'status' [-Wunused-variable]
  int i, k, p, q, status = 0;
                  ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c em_mvt.cpp -o em_mvt.o
em_mvt.cpp: In member function 'int em_mvt::t_step()':
em_mvt.cpp:522:9: warning: variable 'minNk' set but not used [-Wunused-but-set-variable]
  double minNk = T_sum;
         ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c hc_meta.cpp -o hc_meta.o
hc_meta.cpp: In member function 'int mvn_dendro::mahalanobis_w(int*, int*, double*)':
hc_meta.cpp:814:16: warning: variable 'S_i' set but not used [-Wunused-but-set-variable]
  const double *S_i, *S_j;
                ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c hc_mvn.cpp -o hc_mvn.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c immunoClust.c -o immunoClust.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c meta_gpa.cpp -o meta_gpa.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c meta_norm.cpp -o meta_norm.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c meta_scale.cpp -o meta_scale.o
meta_scale.cpp: In member function 'void meta_scale::quantile()':
meta_scale.cpp:846:10: warning: variable 'w' set but not used [-Wunused-but-set-variable]
  double *w, *m, *s;
          ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c normalize.cpp -o normalize.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c sub_mvn.cpp -o sub_mvn.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c util.cpp -o util.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c vs_htrans.cpp -o vs_htrans.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o immunoClust.dll tmp.def R_meta.o R_model.o dist_mvn.o em_meta.o em_mvn.o em_mvt.o hc_meta.o hc_mvn.o immunoClust.o meta_gpa.o meta_norm.o meta_scale.o normalize.o sub_mvn.o util.o vs_htrans.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/immunoClust.buildbin-libdir/immunoClust/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'immunoClust'
    finding HTML links ... done
    cell.ClustData                          html  
    cell.EM                                 html  
    cell.FitModel                           html  
    cell.ME                                 html  
    cell.SubClustering                      html  
    cell.hclust                             html  
    cell.process                            html  
    cell.removed                            html  
    dat.exp                                 html  
    dat.fcs                                 html  
    dat.meta                                html  
    immunoClust-package                     html  
    immunoClust.object                      html  
    meta.ME                                 html  
    meta.SubClustering                      html  
    meta.clustering                         html  
    meta.export                             html  
    meta.exprs                              html  
    meta.hclust                             html  
    meta.normalize                          html  
    meta.plot                               html  
    meta.process                            html  
    meta.regnorm                            html  
    plot.immunoClust                        html  
    splom.immunoClust                       html  
    trans.ApplyToData                       html  
    trans.FitToData                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'immunoClust' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c R_meta.cpp -o R_meta.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c R_model.cpp -o R_model.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c dist_mvn.cpp -o dist_mvn.o
dist_mvn.cpp: In member function 'int dist_mvn::hellinger(double*)':
dist_mvn.cpp:56:14: warning: variable 'det_k' set but not used [-Wunused-but-set-variable]
  double det, det_k, det_l, logD;
              ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c em_meta.cpp -o em_meta.o
em_meta.cpp: In member function 'double em_meta::bt_step()':
em_meta.cpp:438:10: warning: variable 'sndLike' set but not used [-Wunused-but-set-variable]
   double sndLike = 0.0;
          ^
em_meta.cpp: In member function 'int em_meta::wt_step()':
em_meta.cpp:539:9: warning: variable 'minNk' set but not used [-Wunused-but-set-variable]
  double minNk = T_sum;
         ^
em_meta.cpp:541:9: warning: variable 'minDelta' set but not used [-Wunused-but-set-variable]
  double minDelta = FLTMAX;
         ^
em_meta.cpp: In member function 'int em_meta::st_step()':
em_meta.cpp:609:9: warning: variable 'minNk' set but not used [-Wunused-but-set-variable]
  double minNk = T_sum;
         ^
em_meta.cpp:611:9: warning: variable 'minDelta' set but not used [-Wunused-but-set-variable]
  double minDelta = FLTMAX;
         ^
em_meta.cpp: In member function 'int em_meta::final(int*, double*, int*)':
em_meta.cpp:1118:10: warning: variable 'maxLike' set but not used [-Wunused-but-set-variable]
   double maxLike = 0;
          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c em_mvn.cpp -o em_mvn.o
em_mvn.cpp: In member function 'int em_gaussian::build(const int*, double*, int*)':
em_mvn.cpp:595:18: warning: unused variable 'status' [-Wunused-variable]
  int i, k, p, q, status = 0;
                  ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c em_mvt.cpp -o em_mvt.o
em_mvt.cpp: In member function 'int em_mvt::t_step()':
em_mvt.cpp:522:9: warning: variable 'minNk' set but not used [-Wunused-but-set-variable]
  double minNk = T_sum;
         ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c hc_meta.cpp -o hc_meta.o
hc_meta.cpp: In member function 'int mvn_dendro::mahalanobis_w(int*, int*, double*)':
hc_meta.cpp:814:16: warning: variable 'S_i' set but not used [-Wunused-but-set-variable]
  const double *S_i, *S_j;
                ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c hc_mvn.cpp -o hc_mvn.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c immunoClust.c -o immunoClust.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c meta_gpa.cpp -o meta_gpa.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c meta_norm.cpp -o meta_norm.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c meta_scale.cpp -o meta_scale.o
meta_scale.cpp: In member function 'void meta_scale::quantile()':
meta_scale.cpp:846:10: warning: variable 'w' set but not used [-Wunused-but-set-variable]
  double *w, *m, *s;
          ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c normalize.cpp -o normalize.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c sub_mvn.cpp -o sub_mvn.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c util.cpp -o util.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c vs_htrans.cpp -o vs_htrans.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o immunoClust.dll tmp.def R_meta.o R_model.o dist_mvn.o em_meta.o em_mvn.o em_mvt.o hc_meta.o hc_mvn.o immunoClust.o meta_gpa.o meta_norm.o meta_scale.o normalize.o sub_mvn.o util.o vs_htrans.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/immunoClust.buildbin-libdir/immunoClust/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'immunoClust' as immunoClust_1.10.0.zip
* DONE (immunoClust)
In R CMD INSTALL
In R CMD INSTALL

Tests output


Example timings

immunoClust.Rcheck/examples_i386/immunoClust-Ex.timings

nameusersystemelapsed
cell.ClustData2.310.002.31
cell.EM1.50.01.5
cell.FitModel1.410.001.41
cell.ME0.870.000.87
cell.SubClustering14.97 0.0415.00
cell.hclust000
cell.process62.59 0.1262.72
cell.removed0.000.020.01
dat.exp1.340.001.36
dat.fcs62.64 0.1762.83
dat.meta0.100.000.09
immunoClust.object000
meta.ME0.170.010.19
meta.SubClustering0.110.020.12
meta.clustering1.260.001.27
meta.export1.220.001.22
meta.exprs0.020.000.01
meta.hclust0.010.000.02
meta.normalize000
meta.plot2.900.032.92
meta.process1.030.021.06
meta.regnorm0.020.000.02
plot.immunoClust0.750.000.75
splom.immunoClust0.780.030.81
trans.ApplyToData0.050.000.05
trans.FitToData0.390.000.39

immunoClust.Rcheck/examples_x64/immunoClust-Ex.timings

nameusersystemelapsed
cell.ClustData2.060.022.07
cell.EM1.400.011.43
cell.FitModel1.370.031.41
cell.ME0.830.000.83
cell.SubClustering16.69 0.0816.76
cell.hclust000
cell.process58.64 0.0658.72
cell.removed0.000.020.01
dat.exp1.170.001.17
dat.fcs63.81 0.0863.89
dat.meta0.250.000.25
immunoClust.object0.020.000.02
meta.ME0.040.000.05
meta.SubClustering0.130.000.12
meta.clustering1.150.011.17
meta.export1.110.021.12
meta.exprs0.020.000.02
meta.hclust000
meta.normalize0.000.010.02
meta.plot2.770.052.81
meta.process1.070.001.08
meta.regnorm000
plot.immunoClust0.780.010.79
splom.immunoClust0.930.000.92
trans.ApplyToData0.060.000.07
trans.FitToData0.410.030.43