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BUILD BIN report for cancerclass on veracruz1

This page was generated on 2018-04-12 13:35:35 -0400 (Thu, 12 Apr 2018).

Package 175/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cancerclass 1.22.0
Daniel Kosztyla
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/cancerclass
Branch: RELEASE_3_6
Last Commit: 34af4ce
Last Changed Date: 2017-10-30 12:39:41 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: cancerclass
Version: 1.22.0
Command: rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cancerclass_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cancerclass.buildbin-libdir
StartedAt: 2018-04-12 11:12:14 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:12:20 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 6.1 seconds
RetCode: 0
Status:  OK 
PackageFile: cancerclass_1.22.0.tgz
PackageFileSize: 1.556 MiB

Command output

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### Running command:
###
###   rm -rf cancerclass.buildbin-libdir && mkdir cancerclass.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cancerclass_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cancerclass.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cancerclass.buildbin-libdir cancerclass_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cancerclass’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c copa.c -o copa.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c cor.c -o cor.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fc.c -o fc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c help.c -o help.o
help.c:335:7: warning: explicitly assigning value of variable of type 'double' to itself [-Wself-assign]
   var=var; ///(to-from-1); R=var(N-1) => /(count-1)
   ˜˜˜^˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ort.c -o ort.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c os.c -o os.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c shift.c -o shift.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c statistics.c -o statistics.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c student.c -o student.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c throw.c -o throw.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c welch.c -o welch.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c wilcox.c -o wilcox.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cancerclass.so copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/cancerclass.buildbin-libdir/cancerclass/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cancerclass)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cancerclass.buildbin-libdir/cancerclass/libs//cancerclass.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "cancerclass.buildbin-libdir/cancerclass/libs//cancerclass.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "cancerclass.buildbin-libdir/cancerclass/libs//cancerclass.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "cancerclass.buildbin-libdir/cancerclass/libs//cancerclass.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "cancerclass.buildbin-libdir/cancerclass/libs//cancerclass.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "cancerclass.buildbin-libdir/cancerclass/libs//cancerclass.so"