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BUILD report for LowMACA on malbec1

This page was generated on 2018-04-12 13:13:25 -0400 (Thu, 12 Apr 2018).

Package 758/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LowMACA 1.10.0
Stefano de Pretis , Giorgio Melloni
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/LowMACA
Branch: RELEASE_3_6
Last Commit: 1f18a12
Last Changed Date: 2017-10-30 12:40:50 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: LowMACA
Version: 1.10.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data LowMACA
StartedAt: 2018-04-11 19:53:44 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 19:54:34 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 50.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data LowMACA
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* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* preparing ‘LowMACA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
Aligning sequences...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
JobId: clustalo-R20180412-005418-0191-64245703-p2m
RUNNING
FINISHED
Creating result file: /tmp/RtmpsuO2Q4/webClustal.out.txt
Creating result file: /tmp/RtmpsuO2Q4/webClustal.sequence.txt
Creating result file: /tmp/RtmpsuO2Q4/webClustal.aln-clustal.clustal
Creating result file: /tmp/RtmpsuO2Q4/webClustal.phylotree.ph
Creating result file: /tmp/RtmpsuO2Q4/webClustal.pim.pim
Quitting from lines 166-168 (LowMACA.Rnw) 
Error: processing vignette 'LowMACA.Rnw' failed with diagnostics:
line 2 did not have 6 elements
Execution halted