Sofie Van Gassen
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/FlowSOM |
| Branch: RELEASE_3_6 |
| Last Commit: dba346b |
| Last Changed Date: 2017-10-30 12:40:47 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:13:05 -0400 (Thu, 12 Apr 2018).
| Package 492/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FlowSOM 1.10.0 Sofie Van Gassen
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: FlowSOM |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings FlowSOM_1.10.0.tar.gz |
| StartedAt: 2018-04-11 23:32:07 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:33:56 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 109.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: FlowSOM.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings FlowSOM_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/FlowSOM.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FlowSOM/DESCRIPTION’ ... OK
* this is package ‘FlowSOM’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FlowSOM’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
CountGroups 8.248 0.052 8.307
FlowSOM 7.540 0.028 7.598
PlotPies 5.284 0.020 5.312
ProcessGatingML 5.072 0.016 5.095
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
FlowSOM.Rcheck/00install.out
* installing *source* package ‘FlowSOM’ ... ** libs gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c som.c -o som.o g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o FlowSOM.so som.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.6-bioc/meat/FlowSOM.Rcheck/FlowSOM/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (FlowSOM)
FlowSOM.Rcheck/FlowSOM-Ex.timings
| name | user | system | elapsed | |
| AggregateFlowFrames | 0.692 | 0.016 | 0.709 | |
| BuildMST | 1.340 | 0.008 | 1.406 | |
| BuildSOM | 1.912 | 0.012 | 1.925 | |
| CountGroups | 8.248 | 0.052 | 8.307 | |
| FMeasure | 0.004 | 0.000 | 0.002 | |
| FlowSOM | 7.540 | 0.028 | 7.598 | |
| FlowSOMSubset | 3.164 | 0.016 | 3.184 | |
| MetaClustering | 2.968 | 0.020 | 2.990 | |
| NewData | 3.112 | 0.008 | 3.124 | |
| PlotCenters | 1.208 | 0.000 | 1.208 | |
| PlotClusters2D | 0.848 | 0.008 | 0.858 | |
| PlotGroups | 0.000 | 0.000 | 0.001 | |
| PlotMarker | 0.928 | 0.004 | 0.933 | |
| PlotNode | 3.188 | 0.016 | 3.208 | |
| PlotNumbers | 0.904 | 0.012 | 0.913 | |
| PlotPies | 5.284 | 0.020 | 5.312 | |
| PlotStars | 1.080 | 0.012 | 1.091 | |
| PlotVariable | 0.932 | 0.000 | 0.933 | |
| ProcessGatingML | 5.072 | 0.016 | 5.095 | |
| Purity | 0.004 | 0.000 | 0.001 | |
| QueryStarPlot | 1.944 | 0.028 | 1.974 | |
| ReadInput | 3.308 | 0.020 | 3.329 | |
| UpdateNodeSize | 1.376 | 0.016 | 1.390 | |
| metaClustering_consensus | 2.332 | 0.008 | 2.342 | |