Yuanyuan Xiao
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DEDS |
| Branch: RELEASE_3_6 |
| Last Commit: 5520565 |
| Last Changed Date: 2017-10-30 12:39:03 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:07:15 -0400 (Thu, 12 Apr 2018).
| Package 341/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DEDS 1.52.0 Yuanyuan Xiao
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: DEDS |
| Version: 1.52.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings DEDS_1.52.0.tar.gz |
| StartedAt: 2018-04-11 22:46:26 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 22:46:55 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 28.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DEDS.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings DEDS_1.52.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/DEDS.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DEDS/DESCRIPTION’ ... OK * this is package ‘DEDS’ version ‘1.52.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DEDS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE deds.stat.linkC: warning in matrix(res$t, byrow = FALSE, nc = newX$nT): partial argument match of 'nc' to 'ncol' sam.multiclass.func: warning in matrix(nr = nrow(X), nc = B): partial argument match of 'nr' to 'nrow' sam.multiclass.func: warning in matrix(nr = nrow(X), nc = B): partial argument match of 'nc' to 'ncol' sam.oneclass.func: warning in matrix(nr = nrow(X), nc = B): partial argument match of 'nr' to 'nrow' sam.oneclass.func: warning in matrix(nr = nrow(X), nc = B): partial argument match of 'nc' to 'ncol' sam.twoclass.func: warning in matrix(nr = nrow(X), nc = B): partial argument match of 'nr' to 'nrow' sam.twoclass.func: warning in matrix(nr = nrow(X), nc = B): partial argument match of 'nc' to 'ncol' * checking Rd files ... NOTE prepare_Rd: comp.fdr.Rd:52-54: Dropping empty section \details prepare_Rd: deds.pval.Rd:65-68: Dropping empty section \examples prepare_Rd: hist.DEDS.Rd:47-50: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.6-bioc/meat/DEDS.Rcheck/00check.log’ for details.
DEDS.Rcheck/00install.out
* installing *source* package ‘DEDS’ ... ** libs gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c deds.c -o deds.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c distance.c -o distance.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c input.c -o input.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c manip.c -o manip.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c random.c -o random.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c sampling.c -o sampling.o gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c stat_fun.c -o stat_fun.o g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o DEDS.so deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.6-bioc/meat/DEDS.Rcheck/DEDS/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (DEDS)
DEDS.Rcheck/DEDS-Ex.timings
| name | user | system | elapsed | |
| aggregateFun | 0.044 | 0.000 | 0.046 | |
| comp.B | 0.012 | 0.000 | 0.013 | |
| comp.F | 0.164 | 0.000 | 0.166 | |
| comp.FC | 0.032 | 0.000 | 0.029 | |
| comp.SAM | 0.592 | 0.008 | 0.603 | |
| comp.adjp | 0.048 | 0.000 | 0.046 | |
| comp.ebayes | 0.012 | 0.000 | 0.013 | |
| comp.fdr | 0.052 | 0.000 | 0.052 | |
| comp.modF | 0.012 | 0.000 | 0.012 | |
| comp.modt | 0.000 | 0.000 | 0.002 | |
| comp.stat | 0.000 | 0.000 | 0.004 | |
| comp.t | 0.044 | 0.000 | 0.044 | |
| comp.unadjp | 0.004 | 0.000 | 0.004 | |
| deds.chooseTest | 2.272 | 0.004 | 2.278 | |
| deds.genExtra | 0.000 | 0.000 | 0.001 | |
| deds.stat | 1.748 | 0.000 | 1.749 | |
| deds.stat.linkC | 0.008 | 0.004 | 0.013 | |
| pairs.DEDS | 0.216 | 0.000 | 0.214 | |
| qqnorm.DEDS | 0.06 | 0.00 | 0.06 | |
| topgenes | 0.044 | 0.000 | 0.044 | |