Package: CoCiteStats

Version: 1.50.0

Command: rm -rf CoCiteStats.buildbin-libdir CoCiteStats.Rcheck && mkdir CoCiteStats.buildbin-libdir CoCiteStats.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CoCiteStats.buildbin-libdir CoCiteStats_1.50.0.tar.gz >CoCiteStats.Rcheck\00install.out 2>&1 && cp CoCiteStats.Rcheck\00install.out CoCiteStats-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CoCiteStats.buildbin-libdir --install="check:CoCiteStats-install.out" --force-multiarch --no-vignettes --timings CoCiteStats_1.50.0.tar.gz

StartedAt: 2018-04-11 23:04:52 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 23:13:40 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 528.1 seconds

RetCode: 0

Status:  OK

CheckDir: CoCiteStats.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf CoCiteStats.buildbin-libdir CoCiteStats.Rcheck && mkdir CoCiteStats.buildbin-libdir CoCiteStats.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CoCiteStats.buildbin-libdir CoCiteStats_1.50.0.tar.gz >CoCiteStats.Rcheck\00install.out 2>&1 && cp CoCiteStats.Rcheck\00install.out CoCiteStats-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CoCiteStats.buildbin-libdir --install="check:CoCiteStats-install.out" --force-multiarch --no-vignettes --timings CoCiteStats_1.50.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/CoCiteStats.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CoCiteStats/DESCRIPTION' ... OK
* this is package 'CoCiteStats' version '1.50.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CoCiteStats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'org.Hs.eg.db'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gene.geneslist.sig: no visible global function definition for 'Lkeys'
gene.geneslist.sig: no visible binding for global variable
  'org.Hs.egPMID'
paperLen: no visible global function definition for 'toTable'
paperLen: no visible binding for global variable 'org.Hs.egPMID'
paperLen: no visible global function definition for 'nhit'
paperLen: no visible global function definition for 'revmap'
Undefined global functions or variables:
  Lkeys nhit org.Hs.egPMID revmap toTable
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
actorAdjTable            33.80   4.46   43.62
gene.geneslist.sig       32.65   0.32   32.97
twTStats                 26.04   0.06   26.13
twowayTable              24.25   0.00   24.25
gene.geneslist.statistic 23.25   0.23   23.49
paperLen                 23.36   0.06   23.42
gene.gene.statistic      22.58   0.15   22.73
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
actorAdjTable            41.90   3.92   45.83
gene.geneslist.sig       33.76   0.36   34.12
gene.gene.statistic      31.94   0.28   32.22
gene.geneslist.statistic 31.77   0.33   32.10
paperLen                 30.79   0.09   30.89
twTStats                 28.38   0.08   28.45
twowayTable              23.16   0.16   23.31
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/CoCiteStats.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'CoCiteStats' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CoCiteStats'
    finding HTML links ... done
    actorAdjTable                           html  
    gene.gene.statistic                     html  
    gene.geneslist.sig                      html  
    gene.geneslist.statistic                html  
    paperLen                                html  
    twTStats                                html  
    twowayTable                             html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CoCiteStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoCiteStats' as CoCiteStats_1.50.0.zip
* DONE (CoCiteStats)
In R CMD INSTALL
In R CMD INSTALL