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INSTALL report for ChIPseeker on tokay1

This page was generated on 2018-04-12 13:24:15 -0400 (Thu, 12 Apr 2018).

Package 221/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseeker 1.14.2
Guangchuang Yu
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/ChIPseeker
Branch: RELEASE_3_6
Last Commit: 00d5ed9
Last Changed Date: 2018-02-27 02:08:55 -0400 (Tue, 27 Feb 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ChIPseeker
Version: 1.14.2
Command: rm -rf ChIPseeker.buildbin-libdir && mkdir ChIPseeker.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ChIPseeker_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ChIPseeker.buildbin-libdir --merge-multiarch ChIPseeker_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ChIPseeker_1.14.2.zip && rm ChIPseeker_1.14.2.tar.gz ChIPseeker_1.14.2.zip
StartedAt: 2018-04-11 18:49:16 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:50:57 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 101.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf ChIPseeker.buildbin-libdir && mkdir ChIPseeker.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ChIPseeker_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ChIPseeker.buildbin-libdir --merge-multiarch ChIPseeker_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ChIPseeker_1.14.2.zip  && rm ChIPseeker_1.14.2.tar.gz ChIPseeker_1.14.2.zip
###
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install for i386

* installing *source* package 'ChIPseeker' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChIPseeker'
    finding HTML links ... done
    ChIPseeker-package                      html  
    annotatePeak                            html  
    as.GRanges                              html  
    as.data.frame.csAnno                    html  
    covplot                                 html  
    csAnno-class                            html  
    dotFun                                  html  
    downloadGEObedFiles                     html  
    downloadGSMbedFiles                     html  
    dropAnno                                html  
    enrichAnnoOverlap                       html  
    enrichPeakOverlap                       html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6pEFtm/R.INSTALL168c7113732e/ChIPseeker/man/enrichPeakOverlap.Rd:26: missing file link 'mclapply'
    getBioRegion                            html  
    getGEOInfo                              html  
    getGEOgenomeVersion                     html  
    getGEOspecies                           html  
    getGeneAnno                             html  
    getGenomicAnnotation                    html  
    getNearestFeatureIndicesAndDistances    html  
    getPromoters                            html  
    getSampleFiles                          html  
    getTagMatrix                            html  
    info                                    html  
    overlap                                 html  
    peakHeatmap                             html  
    plotAnnoBar-methods                     html  
    plotAnnoBar.data.frame                  html  
    plotAnnoPie-methods                     html  
    plotAnnoPie.csAnno                      html  
    plotAvgProf                             html  
    plotAvgProf2                            html  
    plotDistToTSS-methods                   html  
    plotDistToTSS.data.frame                html  
    readPeakFile                            html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6pEFtm/R.INSTALL168c7113732e/ChIPseeker/man/reexports.Rd:14: missing file link 'GRangesList'
    seq2gene                                html  
    show-methods                            html  
    shuffle                                 html  
    tagHeatmap                              html  
    upsetplot-methods                       html  
    vennpie-methods                         html  
    vennplot                                html  
    vennplot.peakfile                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'ChIPseeker' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPseeker' as ChIPseeker_1.14.2.zip
* DONE (ChIPseeker)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'ChIPseeker' successfully unpacked and MD5 sums checked
In R CMD INSTALL