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BUILD BIN report for CNEr on tokay1

This page was generated on 2018-04-12 13:23:49 -0400 (Thu, 12 Apr 2018).

Package 258/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNEr 1.14.0
Ge Tan
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/CNEr
Branch: RELEASE_3_6
Last Commit: b8634d6
Last Changed Date: 2017-10-30 12:40:11 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNEr
Version: 1.14.0
Command: cd CNEr.buildbin-libdir/CNEr && zip -r ../../CNEr_1.14.0.zip . & cd ../..
StartedAt: 2018-04-12 04:31:12 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 04:31:51 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 38.5 seconds
RetCode: 0
Status:  OK  
PackageFile: CNEr_1.14.0.zip
PackageFileSize: 19.53 MiB

Command output

##############################################################################
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###
### Running command:
###
###   cd CNEr.buildbin-libdir/CNEr && zip -r ../../CNEr_1.14.0.zip . & cd ../..
###
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##############################################################################


  adding: data/ (372 bytes security) (stored 0%)
  adding: data/axisTrack.rda (332 bytes security) (stored 0%)
  adding: data/CNEDanRer10Hg38.rda (332 bytes security) (stored 0%)
  adding: data/cneFinalListDanRer10Hg38.rda (332 bytes security) (stored 0%)
  adding: data/CNEHg38DanRer10.rda (332 bytes security) (stored 0%)
  adding: data/cpgIslands.rda (332 bytes security) (stored 0%)
  adding: data/grangesPairsForDotplot.rda (332 bytes security) (stored 0%)
  adding: data/refGenes.rda (332 bytes security) (stored 0%)
  adding: DESCRIPTION (332 bytes security) (deflated 48%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/CNEr.html (332 bytes security) (deflated 57%)
  adding: doc/CNEr.R (332 bytes security) (deflated 78%)
  adding: doc/CNEr.Rmd (332 bytes security) (deflated 69%)
  adding: doc/index.html (332 bytes security) (deflated 67%)
  adding: doc/PairwiseWholeGenomeAlignment.html (332 bytes security) (deflated 66%)
  adding: doc/PairwiseWholeGenomeAlignment.R (332 bytes security) (deflated 79%)
  adding: doc/PairwiseWholeGenomeAlignment.Rmd (332 bytes security) (deflated 67%)
  adding: extdata/ (372 bytes security) (stored 0%)
  adding: extdata/chr4.hg19.galGal3.net.axt.gz (332 bytes security) (deflated 0%)
  adding: extdata/cne2wBf_AstMex102_danRer10_48_50 (332 bytes security) (deflated 71%)
  adding: extdata/cne2wBf_cteIde1_danRer10_100_100 (332 bytes security) (deflated 73%)
  adding: extdata/cne2wBf_cypCar1_danRer10_100_100 (332 bytes security) (deflated 71%)
  adding: extdata/cne2wBf_danRer10_hg38_45_50 (332 bytes security) (deflated 58%)
  adding: extdata/danRer10.hg38.net.axt (332 bytes security) (deflated 70%)
  adding: extdata/danRer10CNE.sqlite (332 bytes security) (deflated 57%)
  adding: extdata/filter_regions.danRer10.bed (332 bytes security) (deflated 76%)
  adding: extdata/filter_regions.hg38.bed (332 bytes security) (deflated 75%)
  adding: extdata/hg38.danRer10.net.axt (332 bytes security) (deflated 68%)
  adding: extdata/rmsk.fa (332 bytes security) (stored 0%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 75%)
  adding: help/CNEr.rdb (332 bytes security) (deflated 1%)
  adding: help/CNEr.rdx (332 bytes security) (stored 0%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 84%)
  adding: html/addAncestorGO.html (332 bytes security) (deflated 50%)
  adding: html/AssemblyStats.html (332 bytes security) (deflated 50%)
  adding: html/axisTrack.html (332 bytes security) (deflated 47%)
  adding: html/Axt-class.html (332 bytes security) (deflated 70%)
  adding: html/Axt-util.html (332 bytes security) (deflated 52%)
  adding: html/axtChain.html (332 bytes security) (deflated 61%)
  adding: html/axtInfo.html (332 bytes security) (deflated 49%)
  adding: html/binner.html (332 bytes security) (deflated 56%)
  adding: html/blatCNE.html (332 bytes security) (deflated 58%)
  adding: html/ceScan-methods.html (332 bytes security) (deflated 67%)
  adding: html/chainMergeSort.html (332 bytes security) (deflated 66%)
  adding: html/chainNetSyntenic.html (332 bytes security) (deflated 69%)
  adding: html/chainPreNet.html (332 bytes security) (deflated 69%)
  adding: html/CNE-class.html (332 bytes security) (deflated 74%)
  adding: html/CNEDanRer10Hg38.html (332 bytes security) (deflated 45%)
  adding: html/CNEDensity.html (332 bytes security) (deflated 64%)
  adding: html/cneFinalListDanRer10Hg38.html (332 bytes security) (deflated 47%)
  adding: html/cneMerge.html (332 bytes security) (deflated 60%)
  adding: html/fetchChromSizes.html (332 bytes security) (deflated 51%)
  adding: html/fixCoordinates.html (332 bytes security) (deflated 60%)
  adding: html/GRangePairs-class.html (332 bytes security) (deflated 69%)
  adding: html/grangesPairsForDotplot.html (332 bytes security) (deflated 48%)
  adding: html/last.html (332 bytes security) (deflated 62%)
  adding: html/lastz.html (332 bytes security) (deflated 63%)
  adding: html/lavToPsl.html (332 bytes security) (deflated 55%)
  adding: html/makeAncoraFiles.html (332 bytes security) (deflated 57%)
  adding: html/makeAxtTracks.html (332 bytes security) (deflated 56%)
  adding: html/makeCNEDensity.html (332 bytes security) (deflated 63%)
  adding: html/makeGRBs.html (332 bytes security) (deflated 59%)
  adding: html/matchDistribution.html (332 bytes security) (deflated 53%)
  adding: html/netToAxt.html (332 bytes security) (deflated 70%)
  adding: html/orgKEGGIds2EntrezIDs.html (332 bytes security) (deflated 50%)
  adding: html/plotCNEDistribution.html (332 bytes security) (deflated 60%)
  adding: html/plotCNEWidth.html (332 bytes security) (deflated 53%)
  adding: html/psubAxt.html (332 bytes security) (deflated 61%)
  adding: html/queryCNEData.html (332 bytes security) (deflated 55%)
  adding: html/R.css (332 bytes security) (deflated 75%)
  adding: html/read.rmMask.GRanges.html (332 bytes security) (deflated 52%)
  adding: html/read.rmskFasta.html (332 bytes security) (deflated 53%)
  adding: html/readAncora.html (332 bytes security) (deflated 57%)
  adding: html/readAncoraIntoSQLite.html (332 bytes security) (deflated 58%)
  adding: html/readAxt.html (332 bytes security) (deflated 60%)
  adding: html/readBed.html (332 bytes security) (deflated 58%)
  adding: html/readCNERangesFromSQLite.html (332 bytes security) (deflated 68%)
  adding: html/reverseCigar.html (332 bytes security) (deflated 52%)
  adding: html/saveCNEToSQLite.html (332 bytes security) (deflated 55%)
  adding: html/scoringMatrix.html (332 bytes security) (deflated 53%)
  adding: html/subAxt-methods.html (332 bytes security) (deflated 65%)
  adding: html/syntenicDotplot.html (332 bytes security) (deflated 60%)
  adding: html/writeAxt.html (332 bytes security) (deflated 51%)
  adding: INDEX (332 bytes security) (deflated 63%)
  adding: libs/ (372 bytes security) (stored 0%)
  adding: libs/i386/ (372 bytes security) (stored 0%)
  adding: libs/i386/CNEr.dll (332 bytes security) (deflated 59%)
  adding: libs/x64/ (372 bytes security) (stored 0%)
  adding: libs/x64/CNEr.dll (332 bytes security) (deflated 56%)
  adding: LICENSE (332 bytes security) (deflated 44%)
  adding: MD5 (332 bytes security) (deflated 48%)
  adding: Meta/ (372 bytes security) (stored 0%)
  adding: Meta/data.rds (332 bytes security) (stored 0%)
  adding: Meta/features.rds (332 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (332 bytes security) (deflated 0%)
  adding: Meta/links.rds (332 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
  adding: Meta/package.rds (332 bytes security) (stored 0%)
  adding: Meta/Rd.rds (332 bytes security) (stored 0%)
  adding: Meta/vignette.rds (332 bytes security) (stored 0%)
  adding: NAMESPACE (332 bytes security) (deflated 65%)
  adding: NEWS (332 bytes security) (deflated 57%)
  adding: obsolete/ (372 bytes security) (stored 0%)
  adding: obsolete/ceScan.r (332 bytes security) (deflated 67%)
  adding: obsolete/ceScanR.r (332 bytes security) (deflated 69%)
  adding: obsolete/class.r (332 bytes security) (deflated 74%)
  adding: obsolete/CNEr.Rnw (332 bytes security) (deflated 69%)
  adding: obsolete/src/ (372 bytes security) (stored 0%)
  adding: obsolete/src/ceScan.c (332 bytes security) (deflated 68%)
  adding: obsolete/src/ceScanBranch1.c (332 bytes security) (deflated 73%)
  adding: obsolete/src/ceScanBranch2.c (332 bytes security) (deflated 72%)
  adding: obsolete/src/compile (332 bytes security) (deflated 92%)
  adding: R/ (372 bytes security) (stored 0%)
  adding: R/CNEr (332 bytes security) (deflated 41%)
  adding: R/CNEr.rdb (332 bytes security) (deflated 22%)
  adding: R/CNEr.rdx (332 bytes security) (deflated 1%)
  adding: scripts/ (372 bytes security) (stored 0%)
  adding: scripts/danRer10Pipeline.R (332 bytes security) (deflated 64%)
  adding: scripts/prepareData.R (332 bytes security) (deflated 73%)