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INSTALL report for BiocGenerics on tokay1

This page was generated on 2018-04-12 13:21:26 -0400 (Thu, 12 Apr 2018).

Package 123/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocGenerics 0.24.0
Bioconductor Package Maintainer
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/BiocGenerics
Branch: RELEASE_3_6
Last Commit: 3db111e
Last Changed Date: 2017-10-30 12:39:37 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocGenerics
Version: 0.24.0
Command: rm -rf BiocGenerics.buildbin-libdir && mkdir BiocGenerics.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/BiocGenerics_0.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocGenerics.buildbin-libdir --merge-multiarch BiocGenerics_0.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL BiocGenerics_0.24.0.zip && rm BiocGenerics_0.24.0.tar.gz BiocGenerics_0.24.0.zip
StartedAt: 2018-04-11 18:12:04 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:13:59 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 115.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf BiocGenerics.buildbin-libdir && mkdir BiocGenerics.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/BiocGenerics_0.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocGenerics.buildbin-libdir --merge-multiarch BiocGenerics_0.24.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL BiocGenerics_0.24.0.zip  && rm BiocGenerics_0.24.0.tar.gz BiocGenerics_0.24.0.zip
###
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install for i386

* installing *source* package 'BiocGenerics' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'append' in package 'BiocGenerics'
Creating a new generic function for 'as.data.frame' in package 'BiocGenerics'
Creating a new generic function for 'cbind' in package 'BiocGenerics'
Creating a new generic function for 'rbind' in package 'BiocGenerics'
Creating a new generic function for 'do.call' in package 'BiocGenerics'
Creating a new generic function for 'duplicated' in package 'BiocGenerics'
Creating a new generic function for 'anyDuplicated' in package 'BiocGenerics'
Creating a new generic function for 'eval' in package 'BiocGenerics'
Creating a new generic function for 'pmax' in package 'BiocGenerics'
Creating a new generic function for 'pmin' in package 'BiocGenerics'
Creating a new generic function for 'pmax.int' in package 'BiocGenerics'
Creating a new generic function for 'pmin.int' in package 'BiocGenerics'
Creating a new generic function for 'Reduce' in package 'BiocGenerics'
Creating a new generic function for 'Filter' in package 'BiocGenerics'
Creating a new generic function for 'Find' in package 'BiocGenerics'
Creating a new generic function for 'Map' in package 'BiocGenerics'
Creating a new generic function for 'Position' in package 'BiocGenerics'
Creating a new generic function for 'get' in package 'BiocGenerics'
Creating a new generic function for 'mget' in package 'BiocGenerics'
Creating a new generic function for 'grep' in package 'BiocGenerics'
Creating a new generic function for 'grepl' in package 'BiocGenerics'
Creating a new generic function for 'is.unsorted' in package 'BiocGenerics'
Creating a new generic function for 'lapply' in package 'BiocGenerics'
Creating a new generic function for 'sapply' in package 'BiocGenerics'
Creating a new generic function for 'lengths' in package 'BiocGenerics'
Creating a new generic function for 'mapply' in package 'BiocGenerics'
Creating a new generic function for 'match' in package 'BiocGenerics'
Creating a new generic function for 'rowSums' in package 'BiocGenerics'
Creating a new generic function for 'colSums' in package 'BiocGenerics'
Creating a new generic function for 'rowMeans' in package 'BiocGenerics'
Creating a new generic function for 'colMeans' in package 'BiocGenerics'
Creating a new generic function for 'order' in package 'BiocGenerics'
Creating a new generic function for 'paste' in package 'BiocGenerics'
Creating a new generic function for 'rank' in package 'BiocGenerics'
Creating a new generic function for 'rownames' in package 'BiocGenerics'
Creating a new generic function for 'colnames' in package 'BiocGenerics'
Creating a new generic function for 'union' in package 'BiocGenerics'
Creating a new generic function for 'intersect' in package 'BiocGenerics'
Creating a new generic function for 'setdiff' in package 'BiocGenerics'
Creating a new generic function for 'sort' in package 'BiocGenerics'
Creating a new generic function for 'table' in package 'BiocGenerics'
Creating a new generic function for 'tapply' in package 'BiocGenerics'
Creating a new generic function for 'unique' in package 'BiocGenerics'
Creating a new generic function for 'unsplit' in package 'BiocGenerics'
Creating a new generic function for 'var' in package 'BiocGenerics'
Creating a new generic function for 'sd' in package 'BiocGenerics'
Creating a new generic function for 'which' in package 'BiocGenerics'
Creating a new generic function for 'which.max' in package 'BiocGenerics'
Creating a new generic function for 'which.min' in package 'BiocGenerics'
Creating a new generic function for 'IQR' in package 'BiocGenerics'
Creating a new generic function for 'mad' in package 'BiocGenerics'
Creating a new generic function for 'xtabs' in package 'BiocGenerics'
Creating a new generic function for 'clusterCall' in package 'BiocGenerics'
Creating a new generic function for 'clusterApply' in package 'BiocGenerics'
Creating a new generic function for 'clusterApplyLB' in package 'BiocGenerics'
Creating a new generic function for 'clusterEvalQ' in package 'BiocGenerics'
Creating a new generic function for 'clusterExport' in package 'BiocGenerics'
Creating a new generic function for 'clusterMap' in package 'BiocGenerics'
Creating a new generic function for 'parLapply' in package 'BiocGenerics'
Creating a new generic function for 'parSapply' in package 'BiocGenerics'
Creating a new generic function for 'parApply' in package 'BiocGenerics'
Creating a new generic function for 'parRapply' in package 'BiocGenerics'
Creating a new generic function for 'parCapply' in package 'BiocGenerics'
Creating a new generic function for 'parLapplyLB' in package 'BiocGenerics'
Creating a new generic function for 'parSapplyLB' in package 'BiocGenerics'
** help
*** installing help indices
  converting help for package 'BiocGenerics'
    finding HTML links ... done
    BiocGenerics-package                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:31: missing file link 'rbind'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:36: missing file link 'anyDuplicated'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:41: missing file link 'pmax'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:42: missing file link 'pmin'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:43: missing file link 'pmax.int'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:44: missing file link 'pmin.int'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:47: missing file link 'Reduce'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:48: missing file link 'Filter'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:49: missing file link 'Find'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:50: missing file link 'Map'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:51: missing file link 'Position'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:54: missing file link 'mget'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:57: missing file link 'grepl'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:62: missing file link 'sapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:71: missing file link 'ncol'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:72: missing file link 'NROW'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:73: missing file link 'NCOL'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:81: missing file link 'rep.int'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:83: missing file link 'rownames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:84: missing file link 'rownames<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:85: missing file link 'colnames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:86: missing file link 'colnames<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:89: missing file link 'union'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:90: missing file link 'intersect'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:91: missing file link 'setdiff'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:96: missing file link 'start<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:97: missing file link 'end'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:98: missing file link 'end<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:99: missing file link 'width'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:100: missing file link 'width<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:138: missing file link 'clusterCall'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:140: missing file link 'clusterApplyLB'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:141: missing file link 'clusterEvalQ'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:142: missing file link 'clusterExport'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:143: missing file link 'clusterMap'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:144: missing file link 'clusterSplit'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:145: missing file link 'parLapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:146: missing file link 'parSapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:147: missing file link 'parApply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:148: missing file link 'parRapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:149: missing file link 'parCapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:150: missing file link 'parLapplyLB'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:151: missing file link 'parSapplyLB'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:158: missing file link 'annotation<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:163: missing file link 'dbfile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:171: missing file link 'organism'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:172: missing file link 'organism<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:173: missing file link 'species'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:174: missing file link 'species<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:181: missing file link 'score<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:184: missing file link 'strand<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:185: missing file link 'invertStrand'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/BiocGenerics-package.Rd:224: missing file link 'selectMethod'
    Extremes                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:18: missing file link 'pmax'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:38: missing file link 'pmax'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:44: missing file link 'pmax'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:53: missing file link 'pmax'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:59: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:62: missing file link 'pmax,Rle-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Extremes.Rd:64: missing file link 'Rle'
    IQR                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/IQR.Rd:44: missing file link 'selectMethod'
    Ontology                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Ontology.Rd:26: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Ontology.Rd:29: missing file link 'Ontology,GOTerms-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/Ontology.Rd:31: missing file link 'GOTerms'
    S3-classes-as-S4-classes                html  
    annotation                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/annotation.Rd:34: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/annotation.Rd:37: missing file link 'annotation,eSet-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/annotation.Rd:39: missing file link 'eSet'
    append                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/append.Rd:54: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/append.Rd:57: missing file link 'append,Vector,Vector-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/append.Rd:59: missing file link 'Vector'
    as.data.frame                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/as.data.frame.Rd:50: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/as.data.frame.Rd:53: missing file link 'as.data.frame,DataFrame-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/as.data.frame.Rd:55: missing file link 'as.data.frame,Ranges-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/as.data.frame.Rd:57: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/as.data.frame.Rd:57: missing file link 'Ranges'
    as.vector                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/as.vector.Rd:15: missing file link 'as.vector'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/get.Rd:64: missing file link 'selectMethod'
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    grep                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/grep.Rd:56: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/image.Rd:46: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/lapply.Rd:61: missing file link 'selectMethod'
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    mad                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/mad.Rd:46: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/mapply.Rd:9: missing file link 'sapply'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/mapply.Rd:54: missing file link 'selectMethod'
    match                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/match.Rd:61: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/mean.Rd:46: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/mean.Rd:51: missing file link 'Rle'
    normalize                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/normalize.Rd:38: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/normalize.Rd:44: missing file link 'FeatureSet'
    nrow                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/nrow.Rd:50: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/nrow.Rd:55: missing file link 'DataFrame'
    order                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/order.Rd:73: missing file link 'selectMethod'
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    organism_species                        html  
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    paste                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/paste.Rd:49: missing file link 'selectMethod'
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    plotMA                                  html  
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    plotPCA                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/plotPCA.Rd:36: missing file link 'selectMethod'
    rank                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/rank.Rd:70: missing file link 'selectMethod'
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    relist                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/relist.Rd:46: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/relist.Rd:51: missing file link 'List'
    rep                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/rep.Rd:12: missing file link 'rep.int'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/rep.Rd:42: missing file link 'rep.int'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/rep.Rd:48: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/rep.Rd:51: missing file link 'rep.int,Rle-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/rep.Rd:53: missing file link 'Rle'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/residuals.Rd:41: missing file link 'selectMethod'
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    score                                   html  
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/score.Rd:37: missing file link 'score,GenomicRanges-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/score.Rd:39: missing file link 'GenomicRanges'
    sets                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sets.Rd:17: missing file link 'union'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sets.Rd:57: missing file link 'GenomicRanges'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sets.Rd:71: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sets.Rd:74: missing file link 'union,GenomicRanges,GenomicRanges-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sets.Rd:77: missing file link 'GenomicRanges'
    sort                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sort.Rd:62: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/sort.Rd:67: missing file link 'Vector'
    start                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/start.Rd:57: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/start.Rd:62: missing file link 'IRanges'
    strand                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/strand.Rd:73: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/strand.Rd:78: missing file link 'GRanges'
    subset                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/subset.Rd:46: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/subset.Rd:49: missing file link 'subset,DataTable-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/subset.Rd:51: missing file link 'DataTable'
    t                                       html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/t.Rd:44: missing file link 'selectMethod'
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Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/t.Rd:49: missing file link 'Hits'
    table                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/table.Rd:46: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/table.Rd:49: missing file link 'table,Rle-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/table.Rd:51: missing file link 'Rle'
    tapply                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/tapply.Rd:64: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/tapply.Rd:67: missing file link 'tapply,Vector,ANY-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/tapply.Rd:69: missing file link 'Vector'
    testPackage                             html  
    unique                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unique.Rd:57: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unique.Rd:60: missing file link 'unique,Rle-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unique.Rd:62: missing file link 'Rle'
    unlist                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unlist.Rd:51: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unlist.Rd:54: missing file link 'unlist,List-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unlist.Rd:56: missing file link 'List'
    unsplit                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:14: missing file link 'unsplit'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:33: missing file link 'unsplit'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:39: missing file link 'unsplit'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:48: missing file link 'unsplit'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:54: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:57: missing file link 'unsplit,List-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/unsplit.Rd:59: missing file link 'List'
    updateObject                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/updateObject.Rd:130: missing file link 'selectMethod'
    var                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/var.Rd:14: missing file link 'var'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/var.Rd:32: missing file link 'var'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/var.Rd:36: missing file link 'var'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/var.Rd:45: missing file link 'var'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/var.Rd:51: missing file link 'selectMethod'
    weights                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/weights.Rd:47: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/weights.Rd:50: missing file link 'weights,PLMset-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/weights.Rd:52: missing file link 'PLMset'
    which                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/which.Rd:57: missing file link 'NumericList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/which.Rd:69: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/which.Rd:72: missing file link 'which.max,NumericList-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/which.Rd:75: missing file link 'NumericList'
    xtabs                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/xtabs.Rd:52: missing file link 'selectMethod'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/xtabs.Rd:55: missing file link 'xtabs,DataTable-method'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpgVTRUz/R.INSTALL10c464951e8b/BiocGenerics/man/xtabs.Rd:57: missing file link 'DataTable'
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'BiocGenerics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocGenerics' as BiocGenerics_0.24.0.zip
* DONE (BiocGenerics)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'BiocGenerics' successfully unpacked and MD5 sums checked
In R CMD INSTALL