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INSTALL report for bsseq on tokay1

This page was generated on 2018-04-12 13:21:55 -0400 (Thu, 12 Apr 2018).

Package 163/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bsseq 1.14.0
Kasper Daniel Hansen
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/bsseq
Branch: RELEASE_3_6
Last Commit: 9efd7a9
Last Changed Date: 2017-10-30 12:39:45 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bsseq
Version: 1.14.0
Command: rm -rf bsseq.buildbin-libdir && mkdir bsseq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/bsseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=bsseq.buildbin-libdir --merge-multiarch bsseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL bsseq_1.14.0.zip && rm bsseq_1.14.0.tar.gz bsseq_1.14.0.zip
StartedAt: 2018-04-11 18:42:28 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:44:34 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 125.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf bsseq.buildbin-libdir && mkdir bsseq.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/bsseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=bsseq.buildbin-libdir --merge-multiarch bsseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL bsseq_1.14.0.zip  && rm bsseq_1.14.0.tar.gz bsseq_1.14.0.zip
###
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install for i386

* installing *source* package 'bsseq' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'bsseq'
    finding HTML links ... done
    BS.chr22                                html  
    BSmooth                                 html  
    BSmooth.fstat                           html  
    BSmooth.tstat                           html  
    BSseq-class                             html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4EsVD8/R.INSTALL159c2fed4078/bsseq/man/BSseq-class.Rd:137: missing file link 'setRealizationBackend'
    BSseq                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4EsVD8/R.INSTALL159c2fed4078/bsseq/man/BSseq.Rd:34: missing file link 'DelayedMatrix'
    BSseqStat-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4EsVD8/R.INSTALL159c2fed4078/bsseq/man/BSseqStat-class.Rd:27: missing file link 'DelayedMatrix'
    BSseqTstat-class                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4EsVD8/R.INSTALL159c2fed4078/bsseq/man/BSseqTstat-class.Rd:27: missing file link 'DelayedMatrix'
    computeStat                             html  
    data.frame2GRanges                      html  
    dmrFinder                               html  
    fisherTests                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4EsVD8/R.INSTALL159c2fed4078/bsseq/man/fisherTests.Rd:55: missing file link 'mclapply'
    getCoverage                             html  
    getMeth                                 html  
    getStats                                html  
    goodnessOfFit                           html  
    hasGRanges-class                        html  
    internals                               html  
    plotRegion                              html  
    read.bismark                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp4EsVD8/R.INSTALL159c2fed4078/bsseq/man/read.bismark.Rd:37: missing file link 'setRealizationBackend'
    read.bsmooth                            html  
    read.umtab                              html  
    smoothSds                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'bsseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bsseq' as bsseq_1.14.0.zip
* DONE (bsseq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'bsseq' successfully unpacked and MD5 sums checked
In R CMD INSTALL