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BioC 3.6: BUILD BIN report for specL on veracruz1

This page was generated on 2017-08-16 13:46:18 -0400 (Wed, 16 Aug 2017).

Package 1274/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
specL 1.11.2
Christian Panse , Witold E. Wolski
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/specL
Last Changed Rev: 129956 / Revision: 131943
Last Changed Date: 2017-05-29 03:07:52 -0400 (Mon, 29 May 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: specL
Version: 1.11.2
Command: rm -rf specL.buildbin-libdir && mkdir specL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh specL_1.11.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R specL.buildbin-libdir
StartedAt: 2017-08-16 11:23:36 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 11:23:55 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 19.0 seconds
RetCode: 0
Status:  OK 
PackageFile: specL_1.11.2.tgz
PackageFileSize: 3.645 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf specL.buildbin-libdir && mkdir specL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh specL_1.11.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R specL.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=specL.buildbin-libdir specL_1.11.2.tar.gz'
>>>>>>> 

* installing *source* package ‘specL’ ...
** libs
clang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c lower_bound.cpp -o lower_bound.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o specL.so lower_bound.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/specL.buildbin-libdir/specL/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (specL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR specL.buildbin-libdir/specL/libs//specL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "specL.buildbin-libdir/specL/libs//specL.so"