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BioC 3.6: BUILD BIN report for proFIA on veracruz1

This page was generated on 2017-08-16 13:49:41 -0400 (Wed, 16 Aug 2017).

Package 1029/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
proFIA 1.3.2
Alexis Delabriere
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/proFIA
Last Changed Rev: 130631 / Revision: 131943
Last Changed Date: 2017-06-23 07:41:39 -0400 (Fri, 23 Jun 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: proFIA
Version: 1.3.2
Command: rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh proFIA_1.3.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R proFIA.buildbin-libdir
StartedAt: 2017-08-16 11:05:36 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 11:06:06 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 30.2 seconds
RetCode: 0
Status:  OK 
PackageFile: proFIA_1.3.2.tgz
PackageFileSize: 1.016 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh proFIA_1.3.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R proFIA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=proFIA.buildbin-libdir proFIA_1.3.2.tar.gz'
>>>>>>> 

* installing *source* package ‘proFIA’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c UtilFunc.c -o UtilFunc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fastMatchPpm.c -o fastMatchPpm.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o proFIA.so FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/proFIA.buildbin-libdir/proFIA/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (proFIA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR proFIA.buildbin-libdir/proFIA/libs//proFIA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "proFIA.buildbin-libdir/proFIA/libs//proFIA.so"