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BioC 3.6: BUILD report for pathprint on malbec1

This page was generated on 2017-08-16 13:25:32 -0400 (Wed, 16 Aug 2017).

Package 968/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pathprint 1.5.2
Sokratis Kariotis
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pathprint
Last Changed Rev: 129685 / Revision: 131943
Last Changed Date: 2017-05-18 05:27:28 -0400 (Thu, 18 May 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pathprint
Version: 1.5.2
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pathprint
StartedAt: 2017-08-15 20:53:25 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 20:53:28 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 3.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pathprint
###
##############################################################################
##############################################################################


* checking for file ‘pathprint/DESCRIPTION’ ... OK
* preparing ‘pathprint’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, cbind,
    colMeans, colSums, colnames, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect,
    is.unsorted, lapply, lengths, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max,
    which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE26nnn/GSE26946/matrix/

Error: processing vignette 'exampleFingerprint.Rnw' failed with diagnostics:
 chunk 2 (label = data) 
Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x),  : 
  'data' must be of a vector type, was 'NULL'
Execution halted