multtest 2.33.0
Katherine S. Pollard
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/multtest | | Last Changed Rev: 129129 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:50:57 -0400 (Mon, 24 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
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### Running command:
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### rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.33.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R multtest.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=multtest.buildbin-libdir multtest_2.33.0.tar.gz'
>>>>>>>
* installing *source* package ‘multtest’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c Rpack.c -o Rpack.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c VScount.c -o VScount.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c block_sampling_fixed.c -o block_sampling_fixed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c bootloop.c -o bootloop.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c mt.c -o mt.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c pairt_sampling.c -o pairt_sampling.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c random.c -o random.o
random.c:48:6: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
z1=abs(seed); /*setting the seed to z1 and initialize it*/
^
random.c:48:6: note: use function 'labs' instead
z1=abs(seed); /*setting the seed to z1 and initialize it*/
^˜˜
labs
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c sampling.c -o sampling.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c sampling_fixed.c -o sampling_fixed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c stat_func.c -o stat_func.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c stat_order.c -o stat_order.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/multtest.buildbin-libdir/multtest/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (multtest)
>>>>>>>
>>>>>>> FIXING LINKS FOR multtest.buildbin-libdir/multtest/libs//multtest.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"